Browse Element(s) Details


OsAffx.25293.1.S1_at

Description tigr:9631.m02956
TID=OsAffx.25293.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3022011/11Mitochondrial import inner membrane translocase subunit Tim17 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g30180OsAffx.22722.1.S1_x_at1/113+17177489..17179797retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30190OsAffx.10496.1.S1_at1/113+17180303..17183412retrotransposon protein, putative, unclassified
LOC_Os03g30200Os.7354.1.S1_at11/113+17191511..17196010Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os03g30210OsAffx.25377.3.S1_at11/113+17197332..17198050hypothetical protein
LOC_Os03g30210OsAffx.25377.3.S1_x_at11/113+17197332..17198050hypothetical protein
LOC_Os03g30210Os.45721.1.S1_s_at8/113+17197332..17198050hypothetical protein
LOC_Os03g30210OsAffx.25377.1.S1_at3/113+17197332..17198050hypothetical protein
LOC_Os03g30210Os.24942.3.S1_s_at2/113+17197332..17198050hypothetical protein
LOC_Os03g30210OsAffx.25377.1.S1_x_at2/113+17197332..17198050hypothetical protein
LOC_Os03g30210Os.24942.4.S1_x_at1/113+17197332..17198050hypothetical protein
LOC_Os03g30210OsAffx.25377.2.S1_x_at1/113+17197332..17198050hypothetical protein
LOC_Os03g30210Os.45721.1.S1_x_at1/113+17197332..17198050hypothetical protein
LOC_Os03g30220OsAffx.25293.1.S1_at11/113+17203247..17204497Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os03g30230OsAffx.3370.1.S1_at11/113+17208468..17209031Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os03g30240OsAffx.25294.1.S1_at11/113+17213591..17214049hypothetical protein
LOC_Os03g30250Os.37902.1.S1_at11/113+17215334..17217366Phytochelatin synthetase-like conserved region family protein, expressed
LOC_Os03g30260Os.50763.1.S1_at11/113+17217308..17221476COBRA-like protein 2 precursor, putative, expressed
LOC_Os03g30264NANA3+17226272..17226922hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0015031biological_processprotein transport
GO:0045039biological_processprotein import into mitochondrial inner membrane
GO:0005739cellular_componentmitochondrion
GO:0005741cellular_componentmitochondrial outer membrane
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005744cellular_componentmitochondrial inner membrane presequence translocase complex
GO:0015450molecular_functionprotein translocase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25293.1.S1_at--367--5771Chr03:17203916..17203940 (25 bp)
GACGAGCGCGACACGGACTTGCCGT
LOC_Os03g30220
OsAffx.25293.1.S1_at--1010--4591Chr03:17203923..17203947 (25 bp)
GCGACACGGACTTGCCGTTGCCGAG
LOC_Os03g30220
OsAffx.25293.1.S1_at--733--6951Chr03:17203963..17203987 (25 bp)
GTACCCGGGCTTCATACTCGACGAC
LOC_Os03g30220
OsAffx.25293.1.S1_at--776--3951Chr03:17203968..17203992 (25 bp)
CGGGCTTCATACTCGACGACGCGGG
LOC_Os03g30220
OsAffx.25293.1.S1_at--873--4331Chr03:17204301..17204325 (25 bp)
CCATGGCCGTCATCGAGAGGGCCGA
LOC_Os03g30220
OsAffx.25293.1.S1_at--43--4151Chr03:17204331..17204355 (25 bp)
CGCTGGACAACTTGCGCTCCTGGGT
LOC_Os03g30220
OsAffx.25293.1.S1_at--1039--2191Chr03:17204337..17204361 (25 bp)
ACAACTTGCGCTCCTGGGTCCACTA
LOC_Os03g30220
OsAffx.25293.1.S1_at--261--9991Chr03:17204360..17204384 (25 bp)
TACCACAGGCGGCTTGTCCCCGAGG
LOC_Os03g30220
OsAffx.25293.1.S1_at--474--8291Chr03:17204370..17204394 (25 bp)
GGCTTGTCCCCGAGGAGGACATCGA
LOC_Os03g30220
OsAffx.25293.1.S1_at--486--8711Chr03:17204374..17204398 (25 bp)
TGTCCCCGAGGAGGACATCGATGGC
LOC_Os03g30220
OsAffx.25293.1.S1_at--318--4091Chr03:17204425..17204449 (25 bp)
CGACGAGCCGCCGATTGGGTTCCTG
LOC_Os03g30220
Target Sequence 
GACGAGCGCGACACGGACTTGCCGTTGCCGAGCCCTCCGCGGAAGCCGTACCCGGGCTTCATACTCGACGACGCGGGCGG
CGGCTTCCTGATCGGCGGCGGGGTCGGCTCCGCCTACCACGCCGCCAGGGGCCTCCTCGGCTCGTCGAGCGGCCACCGCC
TCGCCGGCGCGGCGCGCGCCGTCCGCGCCAACGCGCCCCGCATCAGCGCCACGTGGGCCGCGCGCTGCGGCCTCTACGGC
GCCTTCAAGTGCGCCCTGTCCCTGCCGCGCGCGACGGACGGCGACCCCGTGGTCTCCGTGCTCGCCGCGGGCGCCGCGGG
GGCCGCGCACTGCCTGCGCCGGGGGCCCCTCGCCGTCGGCCGCGGCGCGCTCGTCGGCGCCGCGTCCATGGCCGTCATCG
AGAGGGCCGACGCCGCGCTGGACAACTTGCGCTCCTGGGTCCACTACCACAGGCGGCTTGTCCCCGAGGAGGACATCGAT
GGCGGCGGCGGCAGCGACCCCAAACCCGACGACGAGCCGCCGATTGGGTTCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25293.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis