Browse Element(s) Details


OsAffx.25294.1.S1_at

Description tigr:9631.m02958
TID=OsAffx.25294.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3024011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g30200Os.7354.1.S1_at11/113+17191511..17196010Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os03g30210OsAffx.25377.3.S1_at11/113+17197332..17198050hypothetical protein
LOC_Os03g30210OsAffx.25377.3.S1_x_at11/113+17197332..17198050hypothetical protein
LOC_Os03g30210Os.45721.1.S1_s_at8/113+17197332..17198050hypothetical protein
LOC_Os03g30210OsAffx.25377.1.S1_at3/113+17197332..17198050hypothetical protein
LOC_Os03g30210Os.24942.3.S1_s_at2/113+17197332..17198050hypothetical protein
LOC_Os03g30210OsAffx.25377.1.S1_x_at2/113+17197332..17198050hypothetical protein
LOC_Os03g30210Os.24942.4.S1_x_at1/113+17197332..17198050hypothetical protein
LOC_Os03g30210OsAffx.25377.2.S1_x_at1/113+17197332..17198050hypothetical protein
LOC_Os03g30210Os.45721.1.S1_x_at1/113+17197332..17198050hypothetical protein
LOC_Os03g30220OsAffx.25293.1.S1_at11/113+17203247..17204497Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os03g30230OsAffx.3370.1.S1_at11/113+17208468..17209031Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os03g30240OsAffx.25294.1.S1_at11/113+17213591..17214049hypothetical protein
LOC_Os03g30250Os.37902.1.S1_at11/113+17215334..17217366Phytochelatin synthetase-like conserved region family protein, expressed
LOC_Os03g30260Os.50763.1.S1_at11/113+17217308..17221476COBRA-like protein 2 precursor, putative, expressed
LOC_Os03g30264NANA3+17226272..17226922hypothetical protein
LOC_Os03g30270OsAffx.8319.1.S1_x_at2/113+17230612..17232982retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30270Os.12826.1.S1_at1/113+17230612..17232982retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30280OsAffx.13121.1.S1_at11/113+17233535..17234151hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25294.1.S1_at--909--4691Chr03:17213990..17214014 (25 bp)
GCGGCAGAGCATGATTCGGCGGCAT
LOC_Os03g30240
OsAffx.25294.1.S1_at--711--4691Chr03:17213972..17213996 (25 bp)
GCGGCATGGTGGAGCCCGACGCGGC
LOC_Os03g30240
OsAffx.25294.1.S1_at--150--2731Chr03:17213931..17213955 (25 bp)
AAGCAGCGGCGTGCATGGGCCACCT
LOC_Os03g30240
OsAffx.25294.1.S1_at--107--3571Chr03:17213832..17213856 (25 bp)
CATACAGCAACACCGGTGCAACGGG
LOC_Os03g30240
OsAffx.25294.1.S1_at--489--8371Chr03:17213729..17213753 (25 bp)
GGCGTCCAAGCACCATGAGTTGCTT
LOC_Os03g30240
OsAffx.25294.1.S1_at--546--1511Chr03:17213721..17213745 (25 bp)
AGCACCATGAGTTGCTTACCTTCGA
LOC_Os03g30240
OsAffx.25294.1.S1_at--863--4331Chr03:17213717..17213741 (25 bp)
CCATGAGTTGCTTACCTTCGAGGTC
LOC_Os03g30240
OsAffx.25294.1.S1_at--1077--8891Chr03:17213714..17213738 (25 bp)
TGAGTTGCTTACCTTCGAGGTCACC
LOC_Os03g30240
OsAffx.25294.1.S1_at--910--3791Chr03:17213659..17213683 (25 bp)
CTCGCCGGCGCCTTAAGTCAAATTC
LOC_Os03g30240
OsAffx.25294.1.S1_at--78--7651Chr03:17213653..17213677 (25 bp)
GGCGCCTTAAGTCAAATTCCGCGGC
LOC_Os03g30240
OsAffx.25294.1.S1_at--1016--10491Chr03:17213647..17213671 (25 bp)
TTAAGTCAAATTCCGCGGCTGAGCA
LOC_Os03g30240
Target Sequence 
GCGGCAGAGCATGATTCGGCGGCATGGTGGAGCCCGACGCGGCGACGCGGCTGAGCATGAAGCAGCGGCGTGCATGGGCC
ACCTGGTCTCCATGATCGAGTTCGGCAAGGTGTTCGCCGCCCGCGGCCTCGCCGTCACCGTCGTCGTCGTCGACCCACCA
TACAGCAACACCGGTGCAACGGGGGCTTTCCTCACCGGCGTCACCGCGGCCAACCCGGCCATGACGTTCCACCGTCTGCC
GAAGGTGGAGGTGCCGCCAGTGGCGTCCAAGCACCATGAGTTGCTTACCTTCGAGGTCACCCGCCTCTCCAACCCCAGCC
TCCGCGACTTCCTCGCCGGCGCCTTAAGTCAAATTCCGCGGCTGAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25294.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis