Browse Element(s) Details


Os.24556.1.S1_at

Description gb:AK099471.1
DB_XREF= gi:32984680
TID=Os.24556.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.24556 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013024A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013024A05, full insert sequence.
FL= gb:AK099471.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3364011/11expressed protein
LOC_Os03g477021/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g33620OsAffx.17315.1.S1_at11/118+20864435..20864954Arginine decarboxylase, putative
LOC_Os08g33630Os.48111.1.S1_at11/118+20867234..20871104Uncharacterized protein family UPF0016 containing protein, expressed
LOC_Os08g33640Os.24556.1.S1_at11/118+20877894..20880759expressed protein
LOC_Os08g33650OsAffx.29493.1.S1_at11/118+20881616..20882761expressed protein
LOC_Os08g33660Os.22375.1.S1_x_at11/118+20886707..20888621MYB1, putative, expressed
LOC_Os08g33670OsAffx.29494.1.S1_at10/118+20893100..20895074No apical meristem protein
LOC_Os08g33680Os.47558.1.S1_at11/118+20901358..20903220expressed protein
LOC_Os08g33690NANA8+20903860..20904435expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24556.1.S1_at--346--6831Chr08:20879957..20879981 (25 bp)
GTTTCAGCCGTCCACACTGGGATAA
LOC_Os08g33640
Os.24556.1.S1_at--550--10631Chr08:20880211..20880235 (25 bp)
TTCGCGAAGCGAGCATCCATGGAAC
LOC_Os08g33640
Os.24556.1.S1_at--955--8171Chr08:20880231..20880255 (25 bp)
GGAACCAGAGCTCAGGATGGCCCAT
LOC_Os08g33640
Os.24556.1.S1_at--1159--7991Chr08:20880245..20880269 (25 bp)
GGATGGCCCATAACCTACACAAGAT
LOC_Os08g33640
Os.24556.1.S1_at--750--9851Chr08:20880260..20880284 (25 bp)
TACACAAGATGTCCTCCCTACTGGG
LOC_Os08g33640
Os.24556.1.S1_at--408--10551Chr08:20880386..20880410 (25 bp)
TTCTTGAATGATCACGTCCTTCCTG
LOC_Os08g33640
Os.24556.1.S1_at--771--5631Chr08:20880488..20880512 (25 bp)
GACACTGATCGCGTCACATTGTGTA
LOC_Os08g33640
Os.24556.1.S1_at--439--6931Chr08:20880558..20880582 (25 bp)
GTAGTGCATTCATAGCCAGGTGTAT
LOC_Os08g33640
Os.24556.1.S1_at--692--271Chr08:20880581..20880605 (25 bp)
ATATGGTACCATCTTGTGCCTGTAT
LOC_Os08g33640
Os.24556.1.S1_at--27--6932Chr08:20880623..20880647 (25 bp)
GTATGTTGTATTGTTGTTCCGTGAA
LOC_Os08g33640
Os.24556.1.S1_at--924--6691Chr08:20880638..20880662 (25 bp)
GTTCCGTGAATAATGTACCCTAGTA
LOC_Os08g33640
Target Sequence 
GTTTCAGCCGTCCACACTGGGATAATGGAGGTTTCATTCGCGAAGCGAGCATCCATGGAACCAGAGCTCAGGATGGCCCA
TAACCTACACAAGATGTCCTCCCTACTGGGAGGCGCGCTGTTCATCGCCGACGACGCCTTCCCGGAGACCCCCTATCTCC
ATGCGGCATGGCATCTAGCTGCAGCATTGGGGGTGGGCACATGCAACAAGCTTCTTGAATGATCACGTCCTTCCTGCCTA
TNTAGGCTATAGCTAGTTTTCAACAACCAGTTGATATGAATATGATAGCATTATAGCAATNCATCAACCTGCCGACACTG
ATCGCGTCACATTGTGTAGGTTCACATTGAACCGGAGAAATATTGGCACAGTAGGGTAGACTGGTAGTGCATTCATAGCC
AGGTGTATATGGTACCATCTTGTGCCTGTATTACTGTATATTGTAGTCGTATGTTGTATTGTTGTTCCGTGAATAATGTA
CCCTAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24556.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis