Browse Element(s) Details


Os.24561.1.S1_s_at

Description gb:AK064421.1
DB_XREF= gi:32974439
TID=Os.24561.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24561 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-110-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-110-B10, full insert sequence.
FL= gb:AK064421.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4379011/11Bromodomain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43760Os.8879.1.S1_at6/116+26331273..26343999isoleucyl-tRNA synthetase, putative, expressed
LOC_Os06g43770Os.56085.1.S1_at11/116+26345139..26346101expressed protein
LOC_Os06g43780OsAffx.28089.1.S1_at11/116+26354718..26357951expressed protein
LOC_Os06g43780OsAffx.28089.1.S1_x_at11/116+26354718..26357951expressed protein
LOC_Os06g43790OsAffx.15914.1.S1_at11/116+26359284..26373493Bromodomain containing protein, expressed
LOC_Os06g43790Os.24561.1.S1_s_at11/116+26359284..26373493Bromodomain containing protein, expressed
LOC_Os06g43800Os.12737.1.S1_at11/116+26375117..26378230methyltransferase, putative, expressed
LOC_Os06g43810Os.49529.1.S1_at11/116+26383997..26384661expressed protein
LOC_Os06g43820OsAffx.5095.1.S1_at10/116+26387053..26390622hypothetical protein
LOC_Os06g43830NANA6+26392281..26392499retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g43840Os.17305.1.A1_s_at11/116+26398338..26404234Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006512biological_processubiquitin cycle
GO:0009416biological_processresponse to light stimulus
GO:0016573biological_processhistone acetylation
GO:0005669cellular_componenttranscription factor TFIID complex
GO:0003677molecular_functionDNA binding
GO:0003712molecular_functiontranscription cofactor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24561.1.S1_s_at--307--8971Chr06:26360864..26360888 (25 bp)
TGAAAAGGCTAAACCTGTCCCTGTA
LOC_Os06g43790
Os.24561.1.S1_s_at--1075--2611Chr06:26360853..26360877 (25 bp)
AACCTGTCCCTGTAAAATTCAAATG
LOC_Os06g43790
Os.24561.1.S1_s_at--788--2291Chr06:26360833..26360857 (25 bp)
AAATGTGGAGCACCTGAGAAGTCAT
LOC_Os06g43790
Os.24561.1.S1_s_at--603--8172Chr09:870031..870154 (25 bp)
GGAACATGTCAATCTCAGCTTCTTT
NONE
Os.24561.1.S1_s_at--451--711Chr06:26360691..26360715 (25 bp)
ATGATGATTATCCTCCTGATACTCC
LOC_Os06g43790
Os.24561.1.S1_s_at--1017--8831Chr06:26360675..26360699 (25 bp)
TGATACTCCTAAGCCATCTGTTGTA
LOC_Os06g43790
Os.24561.1.S1_s_at--1039--471Chr06:26360660..26360684 (25 bp)
ATCTGTTGTAATAAGGCCTCCTGCT
LOC_Os06g43790
Os.24561.1.S1_s_at--621--2431Chr06:26360608..26360632 (25 bp)
AAAATTATTATCAAGCAGCCCAAGG
LOC_Os06g43790
Os.24561.1.S1_s_at--499--4931Chr06:26360582..26360606 (25 bp)
GCTTGGAGATCAGCAAAGACCTACT
LOC_Os06g43790
Os.24561.1.S1_s_at--869--1971Chr06:26360555..26360579 (25 bp)
ACTTAGGAGTGGTCAGGAGCCCAGA
LOC_Os06g43790
Os.24561.1.S1_s_at--751--3231Chr06:26360458..26360482 (25 bp)
CAACCTATTCAGATCAATTCCTCAC
LOC_Os06g43790
Target Sequence 
TGAAAAGGCTAAACCTGTCCCTGTAAAATTCAAATGTGGAGCACCTGAGAAGTCATTGGATAGGAACATGTCAATCTCAG
CTTCTTTGGTTTCTGATAAACGTATGATGGATGCTACAGATTCGAAATCAACTGGAAAGGTTAATAAGATTAAAATATCT
AACAAGATAAAATATGATGATTATCCTCCTGATACTCCTAAGCCATCTGTTGTAATAAGGCCTCCTGCTGAAGTGGAGAA
GGATCTACCTCGTAAGAAAATTATTATCAAGCAGCCCAAGGTGCTTGGAGATCAGCAAAGACCTACTGAACTTAGGAGTG
GTCAGGAGCCCAGAAAGACAAGGAAAATTGTTGAATTGTCAAGCTTTGAGAAGAGAGACAGAGAGGATGATAATGGTTTT
TCTGGACAACCTATTCAGATCAATTCCTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24561.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis