Browse Element(s) Details


Os.24643.1.S1_at

Description gb:NM_183429.1
DB_XREF= gi:34893985
GEN=P0672D08.1
TID=Os.24643.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.24643 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0672D08.1 (P0672D08.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0672D08.1 (P0672D08.1), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0101011/11RabGAP/TBC domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01010Os.24643.1.S1_at11/111+1..7364RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os01g01020NANA1+8174..9019cytochrome P450 family protein, putative
LOC_Os01g01030Os.33183.1.S1_at11/111+9523..12619Monocopper oxidase precursor, putative, expressed
LOC_Os01g01030Os.33183.2.S1_at10/111+9523..12619Monocopper oxidase precursor, putative, expressed
LOC_Os01g01040Os.27571.1.S1_at11/111+13123..17122expressed protein
LOC_Os01g01040Os.18676.1.S1_x_at2/111+13123..17122expressed protein
LOC_Os01g01050Os.27637.1.S1_at11/111+19643..23696R3H domain containing protein, expressed
LOC_Os01g01050Os.51208.1.S1_s_at1/111+19643..23696R3H domain containing protein, expressed
LOC_Os01g01060Os.4725.1.S1_at11/111+23940..2543740S ribosomal protein S5, putative, expressed
LOC_Os01g01070Os.26562.1.S1_at11/111+26620..31295expressed protein
LOC_Os01g01070Os.46612.1.S1_x_at9/111+26620..31295expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24643.1.S1_at--673--791Chr01:4921..4945 (25 bp)
ATGGGTTGATCCTTCCACCGGGTAT
LOC_Os01g01010
Os.24643.1.S1_at--771--10671Chr01:4933..4956 (24 bp)
TTCCACCGGGTATTGCCAAGGTATG
LOC_Os01g01010
Os.24643.1.S1_at--780--9891Chr01:5046..5070 (25 bp)
TACTTTCACCTTTTGTTGTTCTCTA
LOC_Os01g01010
Os.24643.1.S1_at--672--8611Chr01:5093..5117 (25 bp)
TGGTGCTTTGAGATGCTACTGAGAA
LOC_Os01g01010
Os.24643.1.S1_at--565--2651Chr01:5329..5353 (25 bp)
AAGCCTTCATTTTGCTTTCCGGATG
LOC_Os01g01010
Os.24643.1.S1_at--607--9111Chr01:5352..5376 (25 bp)
TGCTGCTAGTGCTTTTTCGTCGAGA
LOC_Os01g01010
Os.24643.1.S1_at--1052--10611Chr01:5367..5391 (25 bp)
TTCGTCGAGAGCTGTCCTTTGAGGA
LOC_Os01g01010
Os.24643.1.S1_at--73--7271Chr01:5380..5404 (25 bp)
GTCCTTTGAGGAGTCACTTAGCATG
LOC_Os01g01010
Os.24643.1.S1_at--993--6291Chr01:6011..6035 (25 bp)
GATGATGTGGGCTGCTGACTTTAAT
LOC_Os01g01010
Os.24643.1.S1_at--86--5211Chr01:6062..6086 (25 bp)
GAATTGTCTGGAGCCATTGCTGGTA
LOC_Os01g01010
Os.24643.1.S1_at--739--1291Chr01:6942..6966 (25 bp)
AGATGCGTACGCATGGCTATCAAGC
LOC_Os01g01010
Target Sequence 
ATGGGTTGATCCTTCCACCGGGTATTGCCAAGGTATGAGTGATCTACTTTCACCTTTTGTTGTTCTCTATGAGGATGATG
CAGATGCCTTTTGGTGCTTTGAGATGCTACTGAGAAGGATGCGTGAAAATTTCCAGATGGAGGGACCAACAGGAGTTATG
AAGCAGTTGCAAGCATTGTGGAAGATCATGGAAATAACTGATGTAGAATTATTTGAACATTTGTCAACAATTGGTGCTGA
AAGCCTTCATTTTGCTTTCCGGATGCTGCTAGTGCTTTTTCGTCGAGAGCTGTCCTTTGAGGAGTCACTTAGCATGTGGG
AGATGATGTGGGCTGCTGACTTTAATGAAGATGTGATTTTACATTTGGAAGAGAATTGTCTGGAGCCATTGCTGGTAGAT
ATGAGGAATGATTTATCATGTGAGGTGAAAGAAGAGCACCGGATGTTCAATGATAATATGCTGAAGATCAATGTAAAAAG
ATGCGTACGCATGGCTATCAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24643.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis