Browse Element(s) Details


Os.24656.1.S1_at

Description gb:AK103595.1
DB_XREF= gi:32988804
TID=Os.24656.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24656 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033133D22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033133D22, full insert sequence.
FL= gb:AK103595.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5719011/11Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57140Os.14699.1.S1_at8/114+33821058..33830470kinesin-like calmodulin binding protein, putative, expressed
LOC_Os04g57150Os.27939.1.A1_at11/114+33835254..33839085Tafazzin, putative, expressed
LOC_Os04g57160NANA4+33840976..33843492oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g57170OsAffx.14454.1.S1_at11/114+33845694..33846643hypothetical protein
LOC_Os04g57180Os.49944.1.S1_at10/114+33848590..33851736oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g57190OsAffx.14455.1.S1_s_at11/114+33854103..33858227Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os04g57190Os.24656.1.S1_at11/114+33854103..33858227Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os04g57190OsAffx.14455.1.S1_at9/114+33854103..33858227Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os04g57200Os.7115.1.S1_a_at11/114+33861558..33862845heavy metal-associated domain containing protein, expressed
LOC_Os04g57210Os.9650.1.A1_at11/114+33864372..33868483Actin family protein, expressed
LOC_Os04g57220Os.22723.1.S1_a_at11/114+33868683..33871611Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os04g57220Os.22723.3.S1_x_at5/114+33868683..33871611Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os04g57230Os.20204.4.S1_at11/114+33872604..33876347regulatory protein RecX containing protein, expressed
LOC_Os04g57230Os.5935.1.S1_at11/114+33872604..33876347regulatory protein RecX containing protein, expressed
LOC_Os04g57240Os.51414.1.S1_at4/114+33876674..33877784hypothetical protein
LOC_Os04g57250OsAffx.23181.1.S1_x_at11/114+33879770..33880396hypothetical protein
LOC_Os04g57260Os.12273.1.S1_at1/114+33882989..33883390expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005622cellular_componentintracellular
GO:0004221molecular_functionubiquitin thiolesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24656.1.S1_at--675--131Chr04:33855359..33855383 (25 bp)
ATTAAGGCCACCATGCACAACATTC
LOC_Os04g57190
Os.24656.1.S1_at--429--2351Chr04:33855341..33855365 (25 bp)
AACATTCCCAACTCGGTGAACTTCA
LOC_Os04g57190
Os.24656.1.S1_at--248--2171Chr04:33855203..33855227 (25 bp)
ACACTCGTTCTGTCTTCTACTTGAA
LOC_Os04g57190
Os.24656.1.S1_at--422--9891Chr04:33855186..33855210 (25 bp)
TACTTGAACTACCTTGAGCTGCCAC
LOC_Os04g57190
Os.24656.1.S1_at--1042--5891Chr04:33854884..33855195 (25 bp)
GAGCTGCCACGGTCTACCAGGAAGA
LOC_Os04g57190
Os.24656.1.S1_at--90--2011Chr04:33854684..33854708 (25 bp)
ACTCAGCATCTGGACCTCAAATTTA
LOC_Os04g57190
Os.24656.1.S1_at--1070--6751Chr04:33854648..33854672 (25 bp)
GTTACCTAGGAGATGGGCTTGCCCA
LOC_Os04g57190
Os.24656.1.S1_at--46--1611Chr04:33854588..33854612 (25 bp)
AGCTGCGACATATTTCACCTGTTGG
LOC_Os04g57190
Os.24656.1.S1_at--425--1751Chr04:33854513..33854534 (22 bp)
ACCTTTCTATGTCTATTCTCTGCTA
LOC_Os04g57190
Os.24656.1.S1_at--293--8951Chr04:33854131..33854155 (25 bp)
TGACTTGACATTTACACCGCCTAAT
LOC_Os04g57190
Os.24656.1.S1_at--1066--9731Chr04:33854110..33854134 (25 bp)
TAATATCGCTCACTCATTGCCACTT
LOC_Os04g57190
Target Sequence 
ATTAAGGCCACCATGCACAACATTCCCAACTCGGTGAACTTCAACGTAATAGTGCTATCAAGAAAAGCAGAGTAAAGCAA
AACAGAGCTTTTTCAGATAACTGATTGAGGCCATAAAGGTGAAGGGCTATCTAGTTCAGCAAATTACACAGACTTCACAC
TCGTTCTGTCTTCTACTTGAACTACCTTGAGCTGCCACGGTCTACCAGGAAGAAAATTATCGTCGTGAGTCAGAGAATGT
ATACATCACAACTTTCCATGAATAATCGACTGATCCAACATGACTATTGCAGATTCACTCAGCATCTGGACCTCAAATTT
AATAAAGTTTCAGTTACCTAGGAGATGGGCTTGCCCATGCCCATCCAGGAGGGATGCACCAGCTGATCAACCAGCTGCGA
CATATTTCACCTGTTGGCCCTGTAGCTGCTCCCTTTCTCCCTTGATCGGCTGATCGCAATGCAACAAGACACCTTTCTAT
GTCTATTCTCTGCTATTTCTCAAACCAGCATGGTGACTTGACATTTACACCGCCTAATATCGCTCACTCATTGCCACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24656.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis