Browse Element(s) Details


Os.24660.1.S1_at

Description gb:AK107484.1
DB_XREF= gi:32992693
TID=Os.24660.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24660 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-C07, full insert sequence.
FL= gb:AK106025.1 gb:AK107484.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6356011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63510Os.24799.1.S1_at11/113+35816478..35821838pentatricopeptide, putative, expressed
LOC_Os03g63520Os.35309.1.A1_at11/113+35822454..35827086Der1-like family protein, expressed
LOC_Os03g63530Os.19270.1.S1_at10/113+35829135..35833105Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os03g63540Os.5927.1.S1_at10/113+35834707..35835736expressed protein
LOC_Os03g63550Os.49114.1.S1_at11/113+35836236..35838324expressed protein
LOC_Os03g63560Os.24660.1.S1_at11/113+35839760..35841999pentatricopeptide, putative, expressed
LOC_Os03g63570OsAffx.3684.1.S1_at10/113+35843343..35844556hypothetical protein
LOC_Os03g63580OsAffx.25809.1.S1_x_at11/113+35845714..35847333phosphoesterase family protein, putative, expressed
LOC_Os03g63580OsAffx.25809.1.S1_at11/113+35845714..35847333phosphoesterase family protein, putative, expressed
LOC_Os03g63590Os.9048.1.S1_at11/113+35847566..35850627Cleavage and polyadenylation specificity factor, 73 kDa subunit, putative, expressed
LOC_Os03g63600OsAffx.13593.1.S1_at11/113+35855340..35856869Tetraspanin family protein
LOC_Os03g63620Os.56016.1.S1_at11/113+35861701..35862781Tetraspanin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24660.1.S1_at--854--1731Chr03:35840319..35840343 (25 bp)
ACCCCAGTTCATTGTCAAACGGTTG
LOC_Os03g63560
Os.24660.1.S1_at--328--8751Chr03:35840289..35840313 (25 bp)
TGTACAGGCCAGTATCAGGTGCAAA
LOC_Os03g63560
Os.24660.1.S1_at--254--2211Chr03:35840176..35840200 (25 bp)
ACAACTACTCTTCTTTGATCCATGG
LOC_Os03g63560
Os.24660.1.S1_at--639--8851Chr03:35840161..35840185 (25 bp)
TGATCCATGGCTCCAACTTTTGGAC
LOC_Os03g63560
Os.24660.1.S1_at--1014--571Chr03:35839937..35839961 (25 bp)
ATCCAAGTGTAAGGCCAGCTTTCCA
LOC_Os03g63560
Os.24660.1.S1_at--622--3631Chr03:35839891..35839915 (25 bp)
CTTCCTTATCCTACCAAGAAACGCA
LOC_Os03g63560
Os.24660.1.S1_at--1113--5131Chr03:35839869..35839893 (25 bp)
GCAAACGAAGCCCTATACATCAGAG
LOC_Os03g63560
Os.24660.1.S1_at--190--6491Chr03:35839840..35839864 (25 bp)
GATACCCTCCACAATGGCAACAGCA
LOC_Os03g63560
Os.24660.1.S1_at--906--8231Chr03:35839825..35839849 (25 bp)
GGCAACAGCAAGTCCAGCAGACAAT
LOC_Os03g63560
Os.24660.1.S1_at--227--5611Chr03:35839806..35839830 (25 bp)
GACAATATGTCCCAGTCACCTGTTT
LOC_Os03g63560
Os.24660.1.S1_at--1026--1751Chr03:35839789..35839813 (25 bp)
ACCTGTTTGCCCGATGACAGTAGCA
LOC_Os03g63560
Target Sequence 
ACCCCAGTTCATTGTCAAACGGTTGTACTTTGTACAGGCCAGTATCAGGTGCAAAAACAATTCTTTAATTAATGCTGTAC
AATGGAGTATTGTGTATACAACAATTGTAAGGTACAATATTGTATATACAACAATTTTAAGATACAACTACTCTTCTTTG
ATCCATGGCTCCAACTTTTGGACAGAAAAAGTTATGCGGCTCCCCCGGGAGTGACTAAACAATTGAAATTGCTACATCAA
AATATCATTGGCATGCAAAAGAACAAAATTTTAAAACCTGGAGCAGAAGTTCACCAAAGACTAAATATATTGATATCAAT
GTTGAATGGATTACAGGATTCAAGAAATTCATCCACTTCATACTTAAAAGAATCCAGGAACAATCCAAGTGTAAGGCCAG
CTTTCCAGTAATTGAATATGGTAATCATCTTCCTTATCCTACCAAGAAACGCAAACGAAGCCCTATACATCAGAGCCCCG
ATACCCTCCACAATGGCAACAGCAAGTCCAGCAGACAATATGTCCCAGTCACCTGTTTGCCCGATGACAGTAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24660.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis