Browse Element(s) Details


Os.24665.1.S1_at

Description gb:AK073141.1
DB_XREF= gi:32983164
TID=Os.24665.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24665 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013021A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033024N08, full insert sequence.
FL= gb:AK073141.1 gb:AK099442.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0619011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06140Os.53021.1.S1_at11/1111+2921619..2925077Protein kinase domain containing protein, expressed
LOC_Os11g06150Os.55944.1.S1_at11/1111+2928581..2929746expressed protein
LOC_Os11g06159NANA11+2933102..2933350NA
LOC_Os11g06170Os.53732.1.S1_a_at11/1111+2935646..2938722Transcription factor RF2a, putative, expressed
LOC_Os11g06170Os.53732.2.S1_at4/1111+2935646..2938722Transcription factor RF2a, putative, expressed
LOC_Os11g06180OsAffx.18704.1.S1_at11/1111+2946066..2948127GRAS family transcription factor containing protein
LOC_Os11g06190Os.24665.1.S1_at11/1111+2948973..2954715expressed protein
LOC_Os11g06190Os.24665.1.S2_at10/1111+2948973..2954715expressed protein
LOC_Os11g06200OsAffx.30838.1.S1_at11/1111+2957362..2961572hypothetical protein
LOC_Os11g06210NANA11+2962130..2963611NB-ARC domain containing protein
LOC_Os11g06220Os.17131.1.S1_x_at11/1111+2967019..2970212NB-ARC domain containing protein, expressed
LOC_Os11g06220Os.17131.1.S1_at11/1111+2967019..2970212NB-ARC domain containing protein, expressed
LOC_Os11g06230Os.49222.1.S1_at11/1111+2974348..2977376expressed protein
LOC_Os11g06230Os.17131.1.S1_x_at1/1111+2974348..2977376expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24665.1.S1_at--782--3091Chr11:2951235..2951259 (25 bp)
AATACCATTCTGTACTCAGGATCAA
LOC_Os11g06190
Os.24665.1.S1_at--723--7951Chr11:2951217..2951241 (25 bp)
GGATCAAGATGCCAACGGTCCTGTT
LOC_Os11g06190
Os.24665.1.S1_at--985--8431Chr11:2951147..2951171 (25 bp)
GGCCAGTTGTTGAAATGCAGCAGCT
LOC_Os11g06190
Os.24665.1.S1_at--873--1512Chr11:2951129..2951153 (25 bp)
AGCAGCTGCTTGTTAGCGGCTCATG
LOC_Os11g06190
Os.24665.1.S1_at--1148--6791Chr11:2951098..2951122 (25 bp)
GTTTTGGTTCATTAGCGACATTGGA
LOC_Os11g06190
Os.24665.1.S1_at--781--6571Chr11:2951072..2951096 (25 bp)
GATTCTGGCCAGTTGTATTGTCCTG
LOC_Os11g06190
Os.24665.1.S1_at--1120--1591Chr11:2950911..2950935 (25 bp)
AGCTGCCAACAACGAGGATCATTTG
LOC_Os11g06190
Os.24665.1.S1_at--724--7811Chr11:2950818..2950842 (25 bp)
GGATGAAGACCCTACCCGGAAGAGG
LOC_Os11g06190
Os.24665.1.S1_at--461--631Chr11:2950777..2950801 (25 bp)
ATGCTACTAGTGATGCTTGCGCTCA
LOC_Os11g06190
Os.24665.1.S1_at--1001--2271Chr11:2950737..2950761 (25 bp)
AAAGGTACCAGTTGTTCAGAATTCT
LOC_Os11g06190
Os.24665.1.S1_at--687--9651Chr11:2950722..2950746 (25 bp)
TCAGAATTCTGATGTTGCACCCATG
LOC_Os11g06190
Target Sequence 
AATACCATTCTGTACTCAGGATCAAGATGCCAACGGTCCTGTTGAGGGCTTGTCAGAACAAGATTTGTGCATAAAGTGTG
GTAAAGATGGCCAGTTGTTGAAATGCAGCAGCTGCTTGTTAGCGGCTCATGATNCATGTTTTGGTTCATTAGCGACATTG
GATGATTCTGGCCAGTTGTATTGTCCTGTATGCTTCTATACTAAAGCAACTGAAGCATATCAAAAGGCAAAGAAAACGTA
TTCTGAAGCAAGGAAAAACCTATCAGCTTTCCTTGGTAGAAAGCAATTAGCTGAGCAACATCAGCAAGCTGCAGTGGGGC
AAAGAGCTGCCAACAACGAGGATCATTTGAATGGGTGTAACGATGCATCTAAAAGGAAAGATAATCATCAATCTGAAGGA
AATAACCTTTCTCATAGGGATGAAGACCCTACCCGGAAGAGGAAGAAGCAGAAGACAAATGCTACTAGTGATGCTTGCGC
TCAGGAAGTAGTCACTGAAAAGGTACCAGTTGTTCAGAATTCTGATGTTGCACCCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24665.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis