Browse Element(s) Details


Os.49222.1.S1_at

Description gb:AK064948.1
DB_XREF= gi:32974966
TID=Os.49222.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49222 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000P18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000P18, full insert sequence.
FL= gb:AK064948.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0623011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06190Os.24665.1.S1_at11/1111+2948973..2954715expressed protein
LOC_Os11g06190Os.24665.1.S2_at10/1111+2948973..2954715expressed protein
LOC_Os11g06200OsAffx.30838.1.S1_at11/1111+2957362..2961572hypothetical protein
LOC_Os11g06210NANA11+2962130..2963611NB-ARC domain containing protein
LOC_Os11g06220Os.17131.1.S1_x_at11/1111+2967019..2970212NB-ARC domain containing protein, expressed
LOC_Os11g06220Os.17131.1.S1_at11/1111+2967019..2970212NB-ARC domain containing protein, expressed
LOC_Os11g06230Os.49222.1.S1_at11/1111+2974348..2977376expressed protein
LOC_Os11g06230Os.17131.1.S1_x_at1/1111+2974348..2977376expressed protein
LOC_Os11g06240Os.4516.1.S1_a_at1/1111+2983000..2983314ozone-responsive stress-related protein, putative, expressed
LOC_Os11g06250OsAffx.22940.2.S1_s_at10/1111+2984965..2985838hypothetical protein
LOC_Os11g06250OsAffx.22940.3.S1_x_at9/1111+2984965..2985838hypothetical protein
LOC_Os11g06250OsAffx.22940.2.S1_at5/1111+2984965..2985838hypothetical protein
LOC_Os11g06250OsAffx.22940.5.S1_x_at3/1111+2984965..2985838hypothetical protein
LOC_Os11g06250OsAffx.22940.1.S1_s_at3/1111+2984965..2985838hypothetical protein
LOC_Os11g06250OsAffx.31552.2.S1_at1/1111+2984965..2985838hypothetical protein
LOC_Os11g06259OsAffx.22947.1.S1_x_at11/1111+2990007..2994584retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g06259OsAffx.22947.3.S1_x_at5/1111+2990007..2994584retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g06259OsAffx.22947.2.S1_x_at3/1111+2990007..2994584retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g06259OsAffx.22947.5.S1_x_at3/1111+2990007..2994584retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g06268OsAffx.22947.1.S1_x_at9/1111+2998527..3003104retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g06268OsAffx.22947.3.S1_x_at5/1111+2998527..3003104retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g06268OsAffx.22947.2.S1_x_at3/1111+2998527..3003104retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g06268OsAffx.22947.5.S1_x_at3/1111+2998527..3003104retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49222.1.S1_at--859--2731Chr11:2977105..2977129 (25 bp)
AAGAATACATTGTCTACGCTTTGAC
LOC_Os11g06230
Os.49222.1.S1_at--762--7352Chr11:2977198..2977222 (25 bp)
GTGAAAGGAGCATATGTCATACTAT
LOC_Os11g06230
Os.49222.1.S1_at--458--8071Chr11:2977204..2977228 (25 bp)
GGAGCATATGTCATACTATTGTAGT
LOC_Os11g06230
Os.49222.1.S1_at--634--2031Chr11:2977218..2977242 (25 bp)
ACTATTGTAGTTTCATGGATGTCTT
LOC_Os11g06230
Os.49222.1.S1_at--861--831Chr11:2977232..2977256 (25 bp)
ATGGATGTCTTCATTCTTGGAGAAC
LOC_Os11g06230
Os.49222.1.S1_at--879--4871Chr11:2977258..2977282 (25 bp)
GCTATTGTATCTGTTCTTACTAGTT
LOC_Os11g06230
Os.49222.1.S1_at--222--6911Chr11:2977264..2977288 (25 bp)
GTATCTGTTCTTACTAGTTTGGGTA
LOC_Os11g06230
Os.49222.1.S1_at--323--2031Chr11:2977276..2977300 (25 bp)
ACTAGTTTGGGTATGTATAATTCAG
LOC_Os11g06230
Os.49222.1.S1_at--303--6791Chr11:2977300..2977324 (25 bp)
GTTAGTTACTATTGCTACCCTGCTA
LOC_Os11g06230
Os.49222.1.S1_at--835--9951Chr11:2977315..2977339 (25 bp)
TACCCTGCTAGCGTCATGTGTGTGA
LOC_Os11g06230
Os.49222.1.S1_at--800--4852Chr11:2977321..2977345 (25 bp)
GCTAGCGTCATGTGTGTGACAGAAT
LOC_Os11g06230
Target Sequence 
AAGAATACATTGTCTACGCTTTGACAATATAGTTTAGAAGGCTGGGTATGCCTTCACAGATTCTAGCTACTACTGATTAT
TCAGACAGTTTAGGTGAAAGGAGCATATGTCATACTATTGTAGTTTCATGGATGTCTTCATTCTTGGAGAACTGCTATTG
TATCTGTTCTTACTAGTTTGGGTATGTATAATTCAGTTAGTTACTATTGCTACCCTGCTAGCGTCATGTGTGTGACAGAA
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49222.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis