Browse Element(s) Details


Os.24688.1.S1_x_at

Description gb:AK100684.1
DB_XREF= gi:32985893
TID=Os.24688.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24688 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023113M12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023113M12, full insert sequence.
FL= gb:AK100684.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5650011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56470OsAffx.3090.1.S1_at10/112+34565267..34567029hypothetical protein
LOC_Os02g56480OsAffx.12666.1.S1_s_at11/112+34568459..34570262PB1 domain containing protein, expressed
LOC_Os02g56490Os.15769.1.S1_at11/112+34578332..34579354expressed protein
LOC_Os02g56500OsAffx.12667.1.S1_x_at11/112+34590769..34594118expressed protein
LOC_Os02g56500Os.24688.1.S1_x_at11/112+34590769..34594118expressed protein
LOC_Os02g56500Os.24688.1.S1_at10/112+34590769..34594118expressed protein
LOC_Os02g56510Os.6567.1.S1_at11/112+34603539..34609180Phosphate transporter 1, putative, expressed
LOC_Os02g56510Os.51613.1.S1_x_at2/112+34603539..34609180Phosphate transporter 1, putative, expressed
LOC_Os02g56520OsAffx.24894.1.S1_at11/112+34609408..34612854peroxisomal membrane protein, putative, expressed
LOC_Os02g56530Os.47757.1.A1_at11/112+34613990..34617796KE03 protein, putative, expressed
LOC_Os02g56530Os.27744.1.S1_at10/112+34613990..34617796KE03 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24688.1.S1_x_at--934--9331Chr02:34593520..34593544 (25 bp)
TCGAAAACGTTTTCCAAGTCTCAAG
LOC_Os02g56500
Os.24688.1.S1_x_at--278--2851Chr02:34593535..34593559 (25 bp)
AAGTCTCAAGAACATCTGGCTTTCT
LOC_Os02g56500
Os.24688.1.S1_x_at--19--5491Chr02:34593544..34593568 (25 bp)
GAACATCTGGCTTTCTACTGAAATG
LOC_Os02g56500
Os.24688.1.S1_x_at--350--8971Chr02:34593562..34593682 (25 bp)
TGAAATGCAGGAAGTTATCGACGAA
LOC_Os02g56500
Os.24688.1.S1_x_at--404--1811Chr02:34593725..34593749 (25 bp)
ACGCGCCAAGATGTCAATGTGAGCA
LOC_Os02g56500
Os.24688.1.S1_x_at--265--8651Chr02:34593771..34593795 (25 bp)
TGGGCCGTGAGACCAGCACAAACTA
LOC_Os02g56500
Os.24688.1.S1_x_at--556--1491Chr02:34593785..34593809 (25 bp)
AGCACAAACTATCCCCTTGTCAATT
LOC_Os02g56500
Os.24688.1.S1_x_at--1004--8511Chr02:34593841..34593865 (25 bp)
TGGAGCCCTGGGATCAACCTGGTGC
LOC_Os02g56500
Os.24688.1.S1_x_at--722--6271Chr02:34593904..34593928 (25 bp)
GATGTCTGGCTATCTGTCGGTGAAC
LOC_Os02g56500
Os.24688.1.S1_x_at--429--4911Chr02:34594019..34594043 (25 bp)
GCTTCTGTACGGCAATAGGGCATGT
LOC_Os02g56500
Os.24688.1.S1_x_at--232--571Chr02:34594055..34594079 (25 bp)
ATCCTAGCAGATAACTTTAGCGTGT
LOC_Os02g56500
Target Sequence 
TCGAAAACGTTTTCCAAGTCTCAAGAACATCTGGCTTTCTACTGAAATGCAGGAAGTTATCGACGAAACAAAATTATATC
CCAAATGGAATTTCTATTTCACAAATGTGACGCGCCAAGATGTCAATGTGAGCATGGCAATGTATGAGGCCAGCCTGGGC
CGTGAGACCAGCACAAACTATCCCCTTGTCAATTTNATCATGGCCACTGAAGCAGATTTNTTCATTGGAGCCCTGGGATC
AACCTGGTGCTACCTNATNGACGGCATGCGGAACACCGCAGGAAAGGTGATGTCTGGCTATCTGTCGGTGAACAAGGACC
GGTTCTGGTAAGNAATTCAGAAGCTGCTAANCCTTGTTCATTGTATTTTAGCTCCTCTGAANAGATANGTTTGGCCTAAN
TTTGCTTCTGTACGGCAATAGGGCATGTATATATGCNCCATCCTAGCAGATAACTTTAGCGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24688.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis