Browse Element(s) Details


Os.24695.1.A1_at

Description gb:AK072890.1
DB_XREF= gi:32982913
TID=Os.24695.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24695 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023150E23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023150E23, full insert sequence.
FL= gb:AK072890.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3757011/11U-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37530NANA8+23634567..23640677retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g37540NANA8+23640993..23643918retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g37550Os.28943.1.S1_x_at1/118+23646324..23650290retrotransposon protein, putative, unclassified
LOC_Os08g37560NANA8+23651030..23656533retrotransposon protein, putative, unclassified
LOC_Os08g37570Os.24695.1.A1_at11/118+23660898..23663606U-box domain containing protein, expressed
LOC_Os08g37580Os.28034.1.S1_at11/118+23670543..23672609Homeobox associated leucine zipper family protein, expressed
LOC_Os08g37580Os.52596.1.S1_x_at11/118+23670543..23672609Homeobox associated leucine zipper family protein, expressed
LOC_Os08g37590OsAffx.29572.1.S1_at11/118+23675029..23676321expressed protein
LOC_Os08g37600Os.49089.1.S1_at9/118+23687529..23692257anion transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24695.1.A1_at--658--8591Chr08:23661253..23661277 (25 bp)
TGGTGCACGCGCTCAGGTTCGGACT
LOC_Os08g37570
Os.24695.1.A1_at--1140--7891Chr08:23661238..23661262 (25 bp)
GGTTCGGACTCCATGAGGATCTCTC
LOC_Os08g37570
Os.24695.1.A1_at--1135--431Chr08:23661220..23661244 (25 bp)
ATCTCTCCAAGATCGCCAAGAACGG
LOC_Os08g37570
Os.24695.1.A1_at--866--6191Chr08:23661180..23661204 (25 bp)
GAGGAAGGCGACCTCTCTCATTCAG
LOC_Os08g37570
Os.24695.1.A1_at--992--1611Chr08:23661157..23661181 (25 bp)
AGCTGGCGCGCAAGTGCTACTGAAG
LOC_Os08g37570
Os.24695.1.A1_at--146--4851Chr08:23661142..23661166 (25 bp)
GCTACTGAAGATGAGGACCCCGTTT
LOC_Os08g37570
Os.24695.1.A1_at--1089--5811Chr08:23661127..23661151 (25 bp)
GACCCCGTTTGTAATTGTAACTCAT
LOC_Os08g37570
Os.24695.1.A1_at--34--5531Chr08:23661078..23661102 (25 bp)
GAAAAAATTCTGTTGCTTGCCCTGT
LOC_Os08g37570
Os.24695.1.A1_at--818--3631Chr08:23661063..23661087 (25 bp)
CTTGCCCTGTTCTAGCTGAATGCAT
LOC_Os08g37570
Os.24695.1.A1_at--169--651Chr08:23661044..23661068 (25 bp)
ATGCATATGTGGTGTATCGCCAGAA
LOC_Os08g37570
Os.24695.1.A1_at--892--10811Chr08:23660972..23660996 (25 bp)
TTGTGCCGATTTCAGTCAAACTAGT
LOC_Os08g37570
Target Sequence 
TGGTGCACGCGCTCAGGTTCGGACTCCATGAGGATCTCTCCAAGATCGCCAAGAACGGCACCAGTAGAGCGCAGAGGAAG
GCGACCTCTCTCATTCAGCTGGCGCGCAAGTGCTACTGAAGATGAGGACCCCGTTTGTAATTGTAACTCATTTTCTTTCC
CCCTCTTTCTCAGTAGAAAAAATTCTGTTGCTTGCCCTGTTCTAGCTGAATGCATATGTGGTGTATCGCCAGAATGGGGA
ATTGGTGGTGGAATTGCTGAAAAAAAACACNCCTAAATGTATTTGTGCCGATTTCAGTCAAACTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24695.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis