Browse Element(s) Details


OsAffx.29572.1.S1_at

Description tigr:9636.m03777
TID=OsAffx.29572.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3759011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37550Os.28943.1.S1_x_at1/118+23646324..23650290retrotransposon protein, putative, unclassified
LOC_Os08g37560NANA8+23651030..23656533retrotransposon protein, putative, unclassified
LOC_Os08g37570Os.24695.1.A1_at11/118+23660898..23663606U-box domain containing protein, expressed
LOC_Os08g37580Os.28034.1.S1_at11/118+23670543..23672609Homeobox associated leucine zipper family protein, expressed
LOC_Os08g37580Os.52596.1.S1_x_at11/118+23670543..23672609Homeobox associated leucine zipper family protein, expressed
LOC_Os08g37590OsAffx.29572.1.S1_at11/118+23675029..23676321expressed protein
LOC_Os08g37600Os.49089.1.S1_at9/118+23687529..23692257anion transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29572.1.S1_at--104--10211Chr08:23675334..23675358 (25 bp)
TATTTGGTGGCTCGCCGTCTCACTA
LOC_Os08g37590
OsAffx.29572.1.S1_at--730--9691Chr08:23675353..23675377 (25 bp)
TCACTATCTCTCTCAGATGGTGTAT
LOC_Os08g37590
OsAffx.29572.1.S1_at--779--6251Chr08:23675368..23675392 (25 bp)
GATGGTGTATGCAATCTCCTCACCT
LOC_Os08g37590
OsAffx.29572.1.S1_at--200--51Chr08:23675453..23675477 (25 bp)
ATTGTCCTCTCCGTTGCAGCTAGAG
LOC_Os08g37590
OsAffx.29572.1.S1_at--1150--1311Chr08:23675474..23675498 (25 bp)
AGAGGAATTGGCCTCTATGGCCTGC
LOC_Os08g37590
OsAffx.29572.1.S1_at--650--3171Chr08:23675479..23675503 (25 bp)
AATTGGCCTCTATGGCCTGCTCTTG
LOC_Os08g37590
OsAffx.29572.1.S1_at--810--3751Chr08:23675498..23675522 (25 bp)
CTCTTGCCTCGGCATCCGCATGGAT
LOC_Os08g37590
OsAffx.29572.1.S1_at--1017--531Chr08:23675511..23675535 (25 bp)
ATCCGCATGGATTAGGGCTTTGGGC
LOC_Os08g37590
OsAffx.29572.1.S1_at--208--8571Chr08:23675518..23675542 (25 bp)
TGGATTAGGGCTTTGGGCACACCAA
LOC_Os08g37590
OsAffx.29572.1.S1_at--322--8271Chr08:23675526..23675550 (25 bp)
GGCTTTGGGCACACCAAGGTCCAGC
LOC_Os08g37590
OsAffx.29572.1.S1_at--1043--2891Chr08:23675541..23675565 (25 bp)
AAGGTCCAGCCTTCAACGGCATCTC
LOC_Os08g37590
Target Sequence 
TATTTGGTGGCTCGCCGTCTCACTATCTCTCTCAGATGGTGTATGCAATCTCCTCACCTGCCACCGCACTGCCACTGCCG
CCGCCGCCGCCGTCGATCGTCGTCGTTGCCGCTGCCCCTATTGTCCTCTCCGTTGCAGCTAGAGGAATTGGCCTCTATGG
CCTGCTCTTGCCTCGGCATCCGCATGGATTAGGGCTTTGGGCACACCAAGGTCCAGCCTTCAACGGCATCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29572.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis