Browse Element(s) Details


Os.52596.1.S1_x_at

Description gb:AK068244.1
DB_XREF= gi:32978262
TID=Os.52596.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52596 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013140I04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013140I04, full insert sequence.
FL= gb:AK068244.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3758011/11Homeobox associated leucine zipper family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37550Os.28943.1.S1_x_at1/118+23646324..23650290retrotransposon protein, putative, unclassified
LOC_Os08g37560NANA8+23651030..23656533retrotransposon protein, putative, unclassified
LOC_Os08g37570Os.24695.1.A1_at11/118+23660898..23663606U-box domain containing protein, expressed
LOC_Os08g37580Os.28034.1.S1_at11/118+23670543..23672609Homeobox associated leucine zipper family protein, expressed
LOC_Os08g37580Os.52596.1.S1_x_at11/118+23670543..23672609Homeobox associated leucine zipper family protein, expressed
LOC_Os08g37590OsAffx.29572.1.S1_at11/118+23675029..23676321expressed protein
LOC_Os08g37600Os.49089.1.S1_at9/118+23687529..23692257anion transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009738biological_processabscisic acid mediated signaling
GO:0009787biological_processregulation of abscisic acid mediated signaling
GO:0009788biological_processnegative regulation of abscisic acid mediated signaling
GO:0009825biological_processmultidimensional cell growth
GO:0009910biological_processnegative regulation of flower development
GO:0009965biological_processleaf morphogenesis
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52596.1.S1_x_at--488--3471Chr08:23671429..23671453 (25 bp)
CAGGGCTCGTCCGAGAGCGACTCGA
LOC_Os08g37580
Os.52596.1.S1_x_at--683--8971Chr08:23671395..23671419 (25 bp)
TGAACGACGCGGAGATCCTTCCACA
LOC_Os08g37580
Os.52596.1.S1_x_at--808--8031Chr08:23671385..23671409 (25 bp)
GGAGATCCTTCCACACAAGCCAGCG
LOC_Os08g37580
Os.52596.1.S1_x_at--484--4071Chr08:23671283..23671307 (25 bp)
CGAGGTGTTCTTCCACGGGCAGCTT
LOC_Os08g37580
Os.52596.1.S1_x_at--810--1911Chr08:23671269..23671293 (25 bp)
ACGGGCAGCTTCTCAAGGTGGACGA
LOC_Os08g37580
Os.52596.1.S1_x_at--1086--3391Chr08:23671264..23671288 (25 bp)
CAGCTTCTCAAGGTGGACGACGACG
LOC_Os08g37580
Os.52596.1.S1_x_at--79--471Chr08:23671182..23671206 (25 bp)
ATCTCCCGTCGCTGCCGTGGTGGGC
LOC_Os08g37580
Os.52596.1.S1_x_at--677--5871Chr08:23671156..23671180 (25 bp)
GAGCCCACCGAGCAATGGACGACCT
LOC_Os08g37580
Os.52596.1.S1_x_at--860--8531Chr08:23671141..23671165 (25 bp)
TGGACGACCTAGCTAGCCGCGAAAA
LOC_Os08g37580
Os.52596.1.S1_x_at--620--4191Chr08:23671125..23671149 (25 bp)
CCGCGAAAACTTTGCTTACTTGGCT
LOC_Os08g37580
Os.52596.1.S1_x_at--967--8951Chr08:23671051..23671075 (25 bp)
TGAAATTGTACCTAGTCCTTTTTTG
LOC_Os08g37580
Target Sequence 
CAGGGCTCGTCCGAGAGCGACTCGAGCGCGGTGCTGAACGACGCGGAGATCCTTCCACACAAGCCAGCGCCGGCGGCCGC
CGCCGACGCCGCGGCCTCGGAGGAGACGGAGGCGGTGGTGACCGGCGCCGCGCTGCTCCACCACGCCGAGGTGTTCTTCC
ACGGGCAGCTTCTCAAGGTGGACGACGACGAGGCGGCGTTCCTAGGCGACGACGGCGCGGCGTGCGGCGGCTTCTTCGCC
GACGAGCATCTCCCGTCGCTGCCGTGGTGGGCCGAGCCCACCGAGCAATGGACGACCTAGCTAGCCGCGAAAACTTTGCT
TACTTGGCTGGGGCGAATAAACAATTCCGTAGGGGGTTTTCTGCAAATTTTTGTAAAATGAAATTGTACCTAGTCCTTTT
TTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52596.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis