Browse Element(s) Details


Os.24696.1.A1_s_at

Description gb:AK111526.1
DB_XREF= gi:37988189
TID=Os.24696.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24696 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013116J15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013023F21, full insert sequence.
FL= gb:AK111526.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3277010/11WD-repeat protein 26, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32730Os.8788.1.S1_at11/1110+16803761..16808452HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os10g32740Os.46668.1.S1_at11/1110+16811397..16816430von Willebrand factor type A domain containing protein, expressed
LOC_Os10g32750OsAffx.18492.1.S1_at11/1110+16823554..16825374von Willebrand factor type A domain containing protein
LOC_Os10g32750OsAffx.31678.3.S1_x_at1/1110+16823554..16825374von Willebrand factor type A domain containing protein
LOC_Os10g32760OsAffx.28308.2.S1_x_at11/1110+16826112..16828353von Willebrand factor type A domain containing protein, expressed
LOC_Os10g32770Os.46667.1.S1_x_at11/1110+16828724..16833806WD-repeat protein 26, putative, expressed
LOC_Os10g32770Os.24696.1.A1_s_at10/1110+16828724..16833806WD-repeat protein 26, putative, expressed
LOC_Os10g32780Os.21180.2.S1_x_at11/1110+16837350..16837759RING zinc finger ankyrin protein, putative
LOC_Os10g32780OsAffx.23573.1.S1_s_at11/1110+16837350..16837759RING zinc finger ankyrin protein, putative
LOC_Os10g32790OsAffx.30645.1.S1_at10/1110+16839866..16841873hypothetical protein
LOC_Os10g32800OsAffx.18494.1.S1_at11/1110+16846326..16849108hypothetical protein
LOC_Os10g32810Os.28098.1.S1_at11/1110+16851369..16854068Glycosyl hydrolase family 14 protein, expressed
LOC_Os10g32820Os.2247.1.S1_at11/1110+16854922..1685645460S ribosomal protein L21, putative, expressed
LOC_Os10g32830Os.23241.2.S1_x_at11/1110+16857216..16860503kinase, pfkB family protein
LOC_Os10g32830Os.23241.1.S1_x_at7/1110+16857216..16860503kinase, pfkB family protein
LOC_Os10g32830Os.23241.1.S1_at5/1110+16857216..16860503kinase, pfkB family protein

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Gene Ontology Classification
GO idTypeName
GO:0007186biological_processG-protein coupled receptor protein signaling pathway
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24696.1.A1_s_at--147--7911NONE
GGATTCCCAGGTCTACATTTGGAAA
NONE
Os.24696.1.A1_s_at--424--7811Chr10:16829152..16829176 (25 bp)
GGTCTTATACGGTCATTCACTTACT
LOC_Os10g32770
Os.24696.1.A1_s_at--550--8211Chr10:16829111..16829135 (25 bp)
GGAATCCTGCTAAGCCACATATGCT
LOC_Os10g32770
Os.24696.1.A1_s_at--283--2091Chr10:16829095..16829119 (25 bp)
ACATATGCTGGCTTCGGCAAGTGAT
LOC_Os10g32770
Os.24696.1.A1_s_at--865--1111Chr10:16829076..16829100 (25 bp)
AGTGATGACCGCACAGTTCGGATTT
LOC_Os10g32770
Os.24696.1.A1_s_at--11--2111Chr10:16829032..16829056 (25 bp)
ACATCGCACACGGTTGACGGCTTGA
LOC_Os10g32770
Os.24696.1.A1_s_at--938--9511Chr10:16828917..16828941 (25 bp)
TTTCCCCGTAGAGCTTTTAGCTACT
LOC_Os10g32770
Os.24696.1.A1_s_at--648--7011Chr10:16828886..16828910 (25 bp)
GTAAACTTTGAACAGGCAGAGGCCC
LOC_Os10g32770
Os.24696.1.A1_s_at--1036--5031Chr10:16828871..16828895 (25 bp)
GCAGAGGCCCAGAAGTAGCAGTATA
LOC_Os10g32770
Os.24696.1.A1_s_at--891--10191Chr10:16828839..16828863 (25 bp)
TATATGCCTGTCTCGGATTAAAGTT
LOC_Os10g32770
Os.24696.1.A1_s_at--377--2331Chr10:16828820..16828844 (25 bp)
AAAGTTTTGCTCGTCTACTCTGTAA
LOC_Os10g32770
Target Sequence 
GGATTCCCAGGTCTACATTTGGAAAAGGCACCTGGAGACGCCAATAAAGGTCTTATACGGTCATTCACTTACTGTAAATT
GTGTGAGNTGGAATCCTGCTAAGCCACATATGCTGGCTTCGGCAAGTGATGACCGCACAGTTCGGATTTGGNTAGCACAC
AAAGGCTCACATCGCACACGGTTGACGGCTTGATGTGGAAAGTTTTGTATGTTTTCCTTGTAAATATATAGTTGTACATC
TTGACTGTAGTAGTGTAGTGTGCACAGAGCAGTTNAGATTTTTTTTCCCCGTAGAGCTTTTAGCTACTTCAGAGGTAAAC
TTTGAACAGGCAGAGGCCCAGAAGTAGCAGTATACTTCATATATATGCCTGTCTCGGATTAAAGTTTTGCTCGTCTACTC
TGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24696.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis