Browse Element(s) Details


Os.24715.2.A1_a_at

Description gb:AK121721.1
DB_XREF= gi:37991344
TID=Os.24715.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.24715 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0404G11.22 (P0404G11.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033081J24, full insert sequence.
FL= gb:AK121721.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2826011/112-phosphoglycerate kinase, putative, expressed
LOC_Os03g0125011/112-phosphoglycerate kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28230NANA7+16484854..16487478transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g28240Os.14491.2.S1_x_at2/117+16490891..16494072transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g28240Os.47463.1.S1_x_at1/117+16490891..16494072transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g28250OsAffx.28642.1.S1_at11/117+16501471..16503020lipase class 3 family protein, putative
LOC_Os07g28260Os.46016.1.S1_x_at11/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28260Os.24715.4.S1_at11/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28260Os.24715.3.S1_x_at11/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28260Os.24715.2.A1_a_at11/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28260Os.25500.1.S1_at10/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28280Os.7517.1.S1_at10/117+16520760..16522328expressed protein
LOC_Os07g28280OsAffx.22334.1.S1_at4/117+16520760..16522328expressed protein
LOC_Os07g28290OsAffx.22333.1.S1_at6/117+16524705..16526475hypothetical protein
LOC_Os07g28300OsAffx.28643.1.S1_at11/117+16527012..16529952Leucine Rich Repeat family protein
LOC_Os07g28310NANA7+16530903..16532984retrotransposon protein, putative, unclassified
LOC_Os07g28320OsAffx.16451.1.S1_x_at11/117+16533261..16533659hypothetical protein
LOC_Os07g28320OsAffx.16451.1.S1_at11/117+16533261..16533659hypothetical protein
LOC_Os07g28330NANA7+16533868..16534731hypothetical protein
LOC_Os07g28340NANA7+16543049..16544307retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24715.2.A1_a_at--992--1552Chr07:16515599..16515623 (25 bp)
AGCTTATTCAGGACTATCTTTGTTC
LOC_Os07g28260
Os.24715.2.A1_a_at--885--10752Chr07:16515915..16515939 (25 bp)
TTGTTGACATTTCAGCGAACTCATT
LOC_Os07g28260
Os.24715.2.A1_a_at--209--192Chr07:16515923..16515947 (25 bp)
ATTTCAGCGAACTCATTCCCTCAGA
LOC_Os07g28260
Os.24715.2.A1_a_at--1027--2532Chr07:16515932..16515956 (25 bp)
AACTCATTCCCTCAGACACTAGATT
LOC_Os07g28260
Os.24715.2.A1_a_at--953--92Chr07:16515937..16515961 (25 bp)
ATTCCCTCAGACACTAGATTGGCTT
LOC_Os07g28260
Os.24715.2.A1_a_at--780--9632Chr07:16515943..16515967 (25 bp)
TCAGACACTAGATTGGCTTCACAGC
LOC_Os07g28260
Os.24715.2.A1_a_at--821--3452Chr07:16516324..16516348 (25 bp)
CAGTGCATCGAACGTGGCCTTTTGG
LOC_Os07g28260
Os.24715.2.A1_a_at--14--532Chr07:16516330..16516354 (25 bp)
ATCGAACGTGGCCTTTTGGCTGCAT
LOC_Os07g28260
Os.24715.2.A1_a_at--3--8472Chr07:16516338..16516362 (25 bp)
TGGCCTTTTGGCTGCATGTTCAGAA
LOC_Os07g28260
Os.24715.2.A1_a_at--122--712Chr07:16516353..16516377 (25 bp)
ATGTTCAGAAAGTCCCAAGCAAGGT
LOC_Os07g28260
Os.24715.2.A1_a_at--1057--2372Chr07:16516369..16516393 (25 bp)
AAGCAAGGTGGGAGCTAACGGATAC
LOC_Os07g28260
Target Sequence 
AGCTTATTCAGGACTATCTTTGTTCTTTTGAATCACAGGGATTGACCGTTGTTGACATTTCAGCGAACTCATTCCCTCAG
ACACTAGATTGGCTTCACAGCTATCTTCTTCAGTGCATCGAACGTGGCCTTTTGGCTGCATGTTCAGAAAGTCCCAAGCA
AGGTGGGAGCTAACGGATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24715.2.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis