Browse Element(s) Details


Os.24715.4.S1_at

Description gb:AK100328.1
DB_XREF= gi:32985537
TID=Os.24715.4
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24715 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0404G11.22 (P0404G11.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023080A02, full insert sequence.
FL= gb:AK100328.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2826011/112-phosphoglycerate kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28230NANA7+16484854..16487478transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g28240Os.14491.2.S1_x_at2/117+16490891..16494072transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g28240Os.47463.1.S1_x_at1/117+16490891..16494072transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g28250OsAffx.28642.1.S1_at11/117+16501471..16503020lipase class 3 family protein, putative
LOC_Os07g28260Os.46016.1.S1_x_at11/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28260Os.24715.4.S1_at11/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28260Os.24715.3.S1_x_at11/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28260Os.24715.2.A1_a_at11/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28260Os.25500.1.S1_at10/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28280Os.7517.1.S1_at10/117+16520760..16522328expressed protein
LOC_Os07g28280OsAffx.22334.1.S1_at4/117+16520760..16522328expressed protein
LOC_Os07g28290OsAffx.22333.1.S1_at6/117+16524705..16526475hypothetical protein
LOC_Os07g28300OsAffx.28643.1.S1_at11/117+16527012..16529952Leucine Rich Repeat family protein
LOC_Os07g28310NANA7+16530903..16532984retrotransposon protein, putative, unclassified
LOC_Os07g28320OsAffx.16451.1.S1_x_at11/117+16533261..16533659hypothetical protein
LOC_Os07g28320OsAffx.16451.1.S1_at11/117+16533261..16533659hypothetical protein
LOC_Os07g28330NANA7+16533868..16534731hypothetical protein
LOC_Os07g28340NANA7+16543049..16544307retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24715.4.S1_at--583--5191Chr07:16518107..16518131 (25 bp)
GCAATGTAGTGTGCTTCACTTGGAA
LOC_Os07g28260
Os.24715.4.S1_at--1084--9231Chr07:16518137..16518161 (25 bp)
TCCATTGTACCATATGCTGTGTGTT
LOC_Os07g28260
Os.24715.4.S1_at--292--4731Chr07:16518152..16518176 (25 bp)
GCTGTGTGTTCTTCTACGACAAATC
LOC_Os07g28260
Os.24715.4.S1_at--771--1491Chr07:16518190..16518214 (25 bp)
AGCAAATAATCCTTCTGACCATCTC
LOC_Os07g28260
Os.24715.4.S1_at--407--451Chr07:16518236..16518260 (25 bp)
ATCTAATTAGGCCTCTTTGTTGCAG
LOC_Os07g28260
Os.24715.4.S1_at--339--10491Chr07:16518311..16518335 (25 bp)
TTAAGCTTTAAGACCGTCGCGAGCA
LOC_Os07g28260
Os.24715.4.S1_at--568--4011Chr07:16518325..16518349 (25 bp)
CGTCGCGAGCACTTGGTTAATGTTC
LOC_Os07g28260
Os.24715.4.S1_at--791--2991Chr07:16518343..16518367 (25 bp)
AATGTTCCAGTGTTAGTTCCAACCT
LOC_Os07g28260
Os.24715.4.S1_at--410--6891Chr07:16520054..16520078 (25 bp)
GTATATAGTTTAGTCCACGCAAAAA
LOC_Os07g28260
Os.24715.4.S1_at--111--4851Chr07:16520118..16520142 (25 bp)
GCTACTTATCATATTGCCGAATCGA
LOC_Os07g28260
Os.24715.4.S1_at--763--5271Chr07:16520152..16520176 (25 bp)
GAATGAACTCATGTTTTGCTCACTC
LOC_Os07g28260
Target Sequence 
GCAATGTAGTGTGCTTCACTTGGAAAAGCTTCCATTGTACCATATGCTGTGTGTTCTTCTACGACAAATCAGAGGAGCTA
TAGAGCAAATAATCCTTCTGACCATCTCAAACACAGGGGTCAATCAATCATCTAATTAGGCCTCTTTGTTGCAGGGGATA
CCCAATTATTGGTTCCTCTGAAAATGTCCACAGGGTAACAGAACTTAAGCTTTAAGACCGTCGCGAGCACTTGGTTAATG
TTCCAGTGTTAGTTCCAACCTGAAAAGGCTCATCAACTAGCCAAAATGTGCCACAACAGCCAACTATTTTGGCACCACAA
AAACTACGGCATTGCTACATTTTTGGCACAAAAGATTGGTGAAGCGAGGGAACCATCCAAACAGACGGGAAACTGTCAGC
AGAAAGAAGAATTGGGCAAAGAGGTTCTCTACATGATAGCGTTTGAGATTAAAATAAAAAGGAAAAATTGTATATAGTTT
AGTCCACGCAAAAAGATGTGAAAATGATCTGAATGATAGTCAACAAAACTTAAGCTACTTATCATATTGCCGAATCGACA
AGGCCTTGAATGAACTCATGTTTTGCTCACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24715.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis