Browse Element(s) Details


Os.2473.1.S1_at

Description gb:AK121085.1
DB_XREF= gi:37990708
TID=Os.2473.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.2473 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023064B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023064B05, full insert sequence.
FL= gb:AK121085.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0105011/11DNA-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01020Os.47430.1.S1_x_at11/115+16675..25049Paired amphipathic helix repeat family protein, expressed
LOC_Os05g01020Os.16909.1.S1_s_at11/115+16675..25049Paired amphipathic helix repeat family protein, expressed
LOC_Os05g01030OsAffx.26674.1.S1_at11/115+38144..43031Phospholipid-transporting ATPase 10, putative, expressed
LOC_Os05g01030Os.52001.1.S1_x_at11/115+38144..43031Phospholipid-transporting ATPase 10, putative, expressed
LOC_Os05g01030Os.52001.1.S2_at4/115+38144..43031Phospholipid-transporting ATPase 10, putative, expressed
LOC_Os05g01040Os.28975.1.S1_at11/115+43240..47780transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g01040Os.51196.1.S1_x_at10/115+43240..47780transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g01050Os.2473.1.S1_at11/115+48925..51138DNA-binding protein, putative, expressed
LOC_Os05g01060OsAffx.4218.1.S1_at10/115+53319..61323expressed protein
LOC_Os05g01070OsAffx.14486.1.S1_at10/115+63585..63862hypothetical protein
LOC_Os05g01080OsAffx.14487.1.S1_at11/115+65473..65973hypothetical protein
LOC_Os05g01090Os.14176.1.S1_at11/115+69722..73833Peroxisomal membrane anchor protein conserved region containing protein, expressed
LOC_Os05g01100OsAffx.4219.1.S1_at11/115+74141..74878expressed protein
LOC_Os05g01110Os.2476.1.S1_at11/115+75419..7784450S ribosomal protein L28, chloroplast precursor, putative, expressed
LOC_Os05g01110OsAffx.4220.1.S1_at11/115+75419..7784450S ribosomal protein L28, chloroplast precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2473.1.S1_at--587--2371Chr05:50612..50636 (25 bp)
AAACCGGCATTATTGTCTTCACCGC
LOC_Os05g01050
Os.2473.1.S1_at--825--10791Chr05:50600..50624 (25 bp)
TTGTCTTCACCGCAAGGAACGACCA
LOC_Os05g01050
Os.2473.1.S1_at--1125--4851Chr05:49420..49444 (25 bp)
GCTAGTGTTGACCTGAGGAATGCCA
LOC_Os05g01050
Os.2473.1.S1_at--914--6591Chr05:49346..49370 (25 bp)
GATTGTGAAAGCTGCTGAAAGCCCA
LOC_Os05g01050
Os.2473.1.S1_at--1103--5551Chr05:49330..49354 (25 bp)
GAAAGCCCAGCTGATTTCACAGTGA
LOC_Os05g01050
Os.2473.1.S1_at--389--6471Chr05:49300..49324 (25 bp)
GATAACAACATGTCCTTGATCGAGT
LOC_Os05g01050
Os.2473.1.S1_at--70--2131Chr05:49264..49288 (25 bp)
ACAGTGGTGGAGTGAGAGCCTTTTT
LOC_Os05g01050
Os.2473.1.S1_at--374--7491Chr05:49220..49244 (25 bp)
GTGGTAGAACCAATTCATCTTAACC
LOC_Os05g01050
Os.2473.1.S1_at--947--6931Chr05:49078..49102 (25 bp)
GTAGTAGTCCTCTGTTGGACCTGTT
LOC_Os05g01050
Os.2473.1.S1_at--400--10731Chr05:48992..49016 (25 bp)
TTGCATGGGCACTACAAGAGAGAGT
LOC_Os05g01050
Os.2473.1.S1_at--701--1351Chr05:48974..48998 (25 bp)
AGAGAGTGCTGTGCTTACTGGCGAT
LOC_Os05g01050
Target Sequence 
AAACCGGCATTATTGTCTTCACCGCAAGGAACGACCAGGTGGATGTAATGAAGGCTGGGGCTAGTGTTGACCTGAGGAAT
GCCAAGATTGATATGTTCAAGGGGTCGATGCGGCTTGCGGTGGACAAGTGGGGGATTGTGAAAGCTGCTGAAAGCCCAGC
TGATTTCACAGTGAAGGAGGATAACAACATGTCCTTGATCGAGTTTGAGCTGGTGACAGTGGTGGAGTGAGAGCCTTTTT
TGGTGTAGGAGGACGGTATGTGGTAGAACCAATTCATCTTAACCAAGCAATAAGTGGAATCATGGTTGATGGGTTTTTGT
TTATGTATTTGGAGATCCGGAGGTTGAGTAGTGTCATCTTTAATTAATTAATTATCCGACAATTGTTGAGAATAGTCTCC
TGTAGTAGTCCTCTGTTGGACCTGTTATGATGATGCATCATCGAGTTGCTTATTGCCGTACTATATATGTATGCTACTGG
TGGTGTTTTGCATGGGCACTACAAGAGAGAGTGCTGTGCTTACTGGCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2473.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis