Browse Element(s) Details


Os.24746.1.S1_at

Description gb:AK060434.1
DB_XREF= gi:32970452
TID=Os.24746.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.24746 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-011-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-011-B08, full insert sequence.
FL= gb:AK060434.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1569011/11no apical meristem, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g15630NANA6+8853014..8854636retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g15640Os.1709.1.S1_x_at11/116+8856882..8862471retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g15640Os.31497.2.S1_x_at6/116+8856882..8862471retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g15650Os.38751.1.A1_at9/116+8864337..8865720retrotransposon protein, putative, unclassified
LOC_Os06g15650Os.49802.1.S2_at1/116+8864337..8865720retrotransposon protein, putative, unclassified
LOC_Os06g15650OsAffx.28492.1.S1_at1/116+8864337..8865720retrotransposon protein, putative, unclassified
LOC_Os06g15660Os.54287.1.S1_at10/116+8867034..8868887expressed protein
LOC_Os06g15670OsAffx.27654.1.S1_at11/116+8871485..8873865hypothetical protein
LOC_Os06g15680OsAffx.24230.1.S1_at1/116+8875052..8876758Cytochrome P450 family protein
LOC_Os06g15680OsAffx.24230.1.S1_x_at1/116+8875052..8876758Cytochrome P450 family protein
LOC_Os06g15680Os.54620.1.A1_at1/116+8875052..8876758Cytochrome P450 family protein
LOC_Os06g15690Os.24746.1.S1_at11/116+8879085..8883818no apical meristem, putative, expressed
LOC_Os06g15700Os.19036.1.S1_at11/116+8890134..8902219expressed protein
LOC_Os06g15710NANA6+8903525..8903881retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g15720NANA6+8908222..8908679retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24746.1.S1_at--797--2891Chr06:8883282..8883306 (25 bp)
AAGGTGATCGATTGACATGTCTCCA
LOC_Os06g15690
Os.24746.1.S1_at--565--2111Chr06:8883296..8883320 (25 bp)
ACATGTCTCCAAGGTGCTGTCAACA
LOC_Os06g15690
Os.24746.1.S1_at--449--7351Chr06:8883397..8883421 (25 bp)
GTGAAGCAACTCTTGTCTCGGACAG
LOC_Os06g15690
Os.24746.1.S1_at--432--2851Chr06:8883426..8883450 (25 bp)
AAGTCATAATTTTGGCCCGGCGGCT
LOC_Os06g15690
Os.24746.1.S1_at--453--1051Chr06:8883467..8883491 (25 bp)
AGGTGAGCTTATGCGCTGGCTTGCC
LOC_Os06g15690
Os.24746.1.S1_at--442--3571Chr06:8883508..8883532 (25 bp)
CATATGGACTGTGCACCGGTGACTA
LOC_Os06g15690
Os.24746.1.S1_at--1100--7151Chr06:8883582..8883606 (25 bp)
GTCTCATTTTGCTTGGATACTCTGG
LOC_Os06g15690
Os.24746.1.S1_at--258--9911Chr06:8883599..8883623 (25 bp)
TACTCTGGACCATCCGGTGGTACAA
LOC_Os06g15690
Os.24746.1.S1_at--944--7611Chr06:8883625..8883649 (25 bp)
GGGAACTTTTGCTTCTGGTTGAACT
LOC_Os06g15690
Os.24746.1.S1_at--115--8531Chr06:8883716..8883740 (25 bp)
TGGACACAAGTCATTTTCTGGAGCT
LOC_Os06g15690
Os.24746.1.S1_at--1096--5951Chr06:8883758..8883782 (25 bp)
GAGAATCTCGTGCAAGCTTCATCTT
LOC_Os06g15690
Target Sequence 
AAGGTGATCGATTGACATGTCTCCAAGGTGCTGTCAACACCATTTTGTACATTGAAGAAACAACTGAAGCCTCTTCCTTC
TGCGAGACAACAGTAAAATGCTGTCGATATATGTGGTGAAGCAACTCTTGTCTCGGACAGTAAAAAGTCATAATTTTGGC
CCGGCGGCTTGCCGGGGTAGGCAANAGGTGAGCTTATGCGCTGGCTTGCCCCTGAATCCCTTGATGCATATGGACTGTGC
ACCGGTGACTATTCAATGCTAAAGATCACATATTCCTGGCTGTAAATTGTGATGGTGGATGTCTCATTTTGCTTGGATAC
TCTGGACCATCCGGTGGTACAAGGGGAACTTTTGCTTCTGGTTGAACTGATTACTCCAATAACTTTCGTGTTAATAACTT
TTGCCATCATGATAGTGCCTATTATTTATAAATGTGGACACAAGTCATTTTCTGGAGCTTGTGGTAAANCAGGGCTGAGA
ATCTCGTGCAAGCTTCATCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24746.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis