Browse Element(s) Details


Os.24791.1.S1_at

Description gb:AK102273.1
DB_XREF= gi:32987482
TID=Os.24791.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.24791 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033089B20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033089B20, full insert sequence.
FL= gb:AK102273.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4014011/11Geranylgeranyl transferase type II beta subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40090Os.14329.1.S1_at11/118+25244851..25247749leucine-rich repeat family protein, putative, expressed
LOC_Os08g40100Os.18042.1.S1_at11/118+25252520..25254432expressed protein
LOC_Os08g40100Os.48069.1.S1_at1/118+25252520..25254432expressed protein
LOC_Os08g40110Os.6122.1.S1_at11/118+25255520..25259472N-acyl-L-amino-acid amidohydrolase family protein, expressed
LOC_Os08g40120OsAffx.17428.1.S1_x_at10/118+25262496..25264789hypothetical protein
LOC_Os08g40120OsAffx.17428.1.S1_at10/118+25262496..25264789hypothetical protein
LOC_Os08g40130OsAffx.17429.1.S1_at11/118+25266422..25267567heavy metal-associated domain containing protein
LOC_Os08g40140Os.24791.1.S1_at11/118+25268416..25271796Geranylgeranyl transferase type II beta subunit, putative, expressed
LOC_Os08g40140OsAffx.19114.1.S1_x_at1/118+25268416..25271796Geranylgeranyl transferase type II beta subunit, putative, expressed
LOC_Os08g40150Os.19417.1.S1_a_at11/118+25272128..25276260AT-hook protein 1, putative, expressed
LOC_Os08g40160Os.11578.1.S1_at11/118+25283288..25285949thylakoid lumen protein, chloroplast precursor, putative, expressed
LOC_Os08g40170Os.5060.1.S1_at11/118+25287041..25288924Cell division control protein 2 homolog D, putative, expressed
LOC_Os08g40170OsAffx.27261.1.S1_at2/118+25287041..25288924Cell division control protein 2 homolog D, putative, expressed
LOC_Os08g40180Os.7600.1.S1_at11/118+25293848..252986563-hydroxy-3-methylglutaryl-coenzyme A reductase 3, putative, expressed
LOC_Os08g40180Os.48518.1.S1_at1/118+25293848..252986563-hydroxy-3-methylglutaryl-coenzyme A reductase 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009414biological_processresponse to water deprivation
GO:0009733biological_processresponse to auxin stimulus
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009788biological_processnegative regulation of abscisic acid mediated signaling
GO:0018344biological_processprotein geranylgeranylation
GO:0005953cellular_componentCAAX-protein geranylgeranyltransferase complex
GO:0004662molecular_functionCAAX-protein geranylgeranyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24791.1.S1_at--750--9271Chr08:25270960..25270984 (25 bp)
TCCTGGTGGGTGCTCTCAAGCTTGA
LOC_Os08g40140
Os.24791.1.S1_at--484--7711Chr08:25270967..25270991 (25 bp)
GGGTGCTCTCAAGCTTGATAATGAT
LOC_Os08g40140
Os.24791.1.S1_at--885--10031Chr08:25270995..25271019 (25 bp)
TAGAGTGCACTGGATTGACAAGGAC
LOC_Os08g40140
Os.24791.1.S1_at--570--111Chr08:25271031..25271184 (25 bp)
ATTCATACTAAATTGCCAGGACAAG
LOC_Os08g40140
Os.24791.1.S1_at--310--171Chr08:25271197..25271221 (25 bp)
ATTTCAGATAGACCAGATAATGCGG
LOC_Os08g40140
Os.24791.1.S1_at--358--6951Chr08:25271221..25271245 (25 bp)
GTAGATATCTACCACACATACTTTG
LOC_Os08g40140
Os.24791.1.S1_at--62--6071Chr08:25271246..25271378 (25 bp)
GAGTTGCAGGGCTTTCACTGATGGA
LOC_Os08g40140
Os.24791.1.S1_at--544--7571Chr08:25271362..25271386 (25 bp)
GGGCTTTCACTGATGGAGTACCCTG
LOC_Os08g40140
Os.24791.1.S1_at--310--1831Chr08:25271411..25271435 (25 bp)
ACGCGCTGCCGCTGGATGTTGTCAA
LOC_Os08g40140
Os.24791.1.S1_at--547--7931Chr08:25271424..25271448 (25 bp)
GGATGTTGTCAACCGGATTTTCTTG
LOC_Os08g40140
Os.24791.1.S1_at--571--3351Chr08:25271470..25271494 (25 bp)
CACGCTCCACAGATCATGCTGTGTA
LOC_Os08g40140
Target Sequence 
TCCTGGTGGGTGCTCTCAAGCTTGATAATGATTGATAGAGTGCACTGGATTGACAAGGACAAACTTGCAAAATTCATACT
AAATTGCCAGGACAAGGAAAATGGTGGAATTTCAGATAGACCAGATAATGCGGTAGATATCTACCACACATACTTTGGAG
TTGCAGGGCTTTCACTGATGGAGTACCCTGNGAGTGAAACCCATGGACCCTGCCTACGCGCTGCCGCTGGATGTTGTCAA
CCGGATTTTCTTGAGAAAAGAACATTAGCATNTGCACGCTCCACAGATCATGCTGTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24791.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis