Browse Element(s) Details


Os.24795.1.S1_at

Description gb:AK120193.1
DB_XREF= gi:37989816
TID=Os.24795.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24795 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-017-H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013035P19, full insert sequence.
FL= gb:AK120193.1 gb:AK058600.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1278011/11DegP protease, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12740Os.4810.1.S1_s_at11/116+6952701..6955077expressed protein
LOC_Os06g12750NANA6+6957249..6957590retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g12760OsAffx.27589.1.S1_at11/116+6962553..6962961hypothetical protein
LOC_Os06g12769NANA6+6968787..6969403NA
LOC_Os06g12780Os.24795.1.S1_at11/116+6979037..6985314DegP protease, putative, expressed
LOC_Os06g12790Os.4079.1.S1_a_at11/116+6989940..6993528RAC-like GTP binding protein ARAC10, putative, expressed
LOC_Os06g12790Os.4079.2.S1_a_at11/116+6989940..6993528RAC-like GTP binding protein ARAC10, putative, expressed
LOC_Os06g12800OsAffx.27591.1.S1_x_at11/116+6994344..6995672expressed protein
LOC_Os06g12800OsAffx.27591.1.S1_at11/116+6994344..6995672expressed protein
LOC_Os06g12810OsAffx.15396.1.S1_at11/116+6999437..7003405expressed protein
LOC_Os06g12810OsAffx.15396.1.S1_x_at11/116+6999437..7003405expressed protein
LOC_Os06g12820Os.51692.1.S1_at10/116+7004873..7007331expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0010206biological_processphotosystem II repair
GO:0009533cellular_componentchloroplast stromal thylakoid
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0004252molecular_functionserine-type endopeptidase activity
GO:0004295molecular_functiontrypsin activity
GO:0008236molecular_functionserine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24795.1.S1_at--812--5111Chr06:6984787..6984811 (25 bp)
GCACATTTTTGCCTCAACTGATTAA
LOC_Os06g12780
Os.24795.1.S1_at--191--5631Chr06:6984824..6984848 (25 bp)
GACGAGAAGCCTCACTTTGGGATTT
LOC_Os06g12780
Os.24795.1.S1_at--1025--10011Chr06:6984915..6984939 (25 bp)
TAGCAGGTTCACATCACAAGTTGGA
LOC_Os06g12780
Os.24795.1.S1_at--416--2431Chr06:6984992..6985016 (25 bp)
AAAAGTTTTGCTCCCATTTGAATAT
LOC_Os06g12780
Os.24795.1.S1_at--94--2391Chr06:6985041..6985065 (25 bp)
AAACTTACCCTGAATGTCGTCCCTG
LOC_Os06g12780
Os.24795.1.S1_at--941--731Chr06:6985067..6985091 (25 bp)
ATGTTCTCTTCTTACTGCCAAGTTT
LOC_Os06g12780
Os.24795.1.S1_at--113--3231Chr06:6985085..6985109 (25 bp)
CAAGTTTGATCTGGTCTCCTGTAGA
LOC_Os06g12780
Os.24795.1.S1_at--1073--2451Chr06:6985127..6985151 (25 bp)
AACAAGAGGCTATGCTTTTCTGTGC
LOC_Os06g12780
Os.24795.1.S1_at--602--3891Chr06:6985146..6985170 (25 bp)
CTGTGCATTTTACCTGCTTTCAGGA
LOC_Os06g12780
Os.24795.1.S1_at--1010--211Chr06:6985233..6985257 (25 bp)
ATTTGGTTTGTTTTCATGTCCTGAC
LOC_Os06g12780
Os.24795.1.S1_at--678--771Chr06:6985248..6985272 (25 bp)
ATGTCCTGACTTTTGTGATCTTGCC
LOC_Os06g12780
Target Sequence 
GCACATTTTTGCCTCAACTGATTAANAGTGTCCACTAGACGAGAAGCCTCACTTTGGGATTTTGAGTGTCAAATGAATTC
TGGATGCAGATCAGACTGGAGTCTGGTGGCACCAAAGAAAGCCAAGGATAGCAGGTTCACATCACAAGTTGGATTAATTA
GGTTGAATGATAGCAAGGAGCCCTTGAGATATTGGGGAATATTACAAAAGTTTTGCTCCCATTTGAATATTTGATTAATT
GAGGCAATATCAGAAAACTTACCCTGAATGTCGTCCCTGCATGTTCTCTTCTTACTGCCAAGTTTGATCTGGTCTCCTGT
AGACGTATGTAATCTTTTGCAACAAGAGGCTATGCTTTTCTGTGCATTTTACCTGCTTTCAGGAGTACTTGTTAAAGTGC
TTTTTGGCGGCCAAAACATATATTTTTAAGTGTCTTTTGTACCAGAATTTGGTTTGTTTTCATGTCCTGACTTTTGTGAT
CTTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24795.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis