Browse Element(s) Details


Os.24884.1.A1_s_at

Description gb:CA762945
DB_XREF= gi:25806984
DB_XREF=BR060006A20C02.ab1
CLONE=BR060006A20C02.ab1
TID=Os.24884.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.24884 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_175237.1 (A.thaliana) lipoamide dehydrogenase precursor (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g459903/11ferric leghemoglobin reductase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g45970Os.26902.1.S1_at11/113+25932628..25944379expressed protein
LOC_Os03g45970OsAffx.943.1.S1_at2/113+25932628..25944379expressed protein
LOC_Os03g45970OsAffx.20275.1.S1_at1/113+25932628..25944379expressed protein
LOC_Os03g45970Os.46805.1.S1_at1/113+25932628..25944379expressed protein
LOC_Os03g45980Os.53437.1.S1_at11/113+25946335..25949128expressed protein
LOC_Os03g45990Os.25461.1.S1_at8/113+25957751..25958560ferric leghemoglobin reductase, putative
LOC_Os03g45990Os.24884.1.A1_s_at3/113+25957751..25958560ferric leghemoglobin reductase, putative
LOC_Os03g45990OsAffx.26764.1.S1_x_at1/113+25957751..25958560ferric leghemoglobin reductase, putative
LOC_Os03g46010OsAffx.3529.1.S1_at10/113+25963128..25964241hypothetical protein
LOC_Os03g46030OsAffx.13375.1.S1_at11/113+25970129..25970551hypothetical protein
LOC_Os03g46040Os.49439.1.S1_at11/113+25972952..25977048expressed protein
LOC_Os03g46046NANA3+25981759..25982339hypothetical protein
LOC_Os03g46052NANA3+25983378..25983992hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24884.1.A1_s_at--613--851Chr03:25955336..25955360 (25 bp)
ATGGCAGGAGAAATATCGTGGCTTC
NONE
Os.24884.1.A1_s_at--665--5591Chr03:25955345..25955369 (25 bp)
GAAATATCGTGGCTTCAACTTATCC
NONE
Os.24884.1.A1_s_at--236--8291Chr03:25955355..25955379 (25 bp)
GGCTTCAACTTATCCAATACAATAC
NONE
Os.24884.1.A1_s_at--70--8211Chr03:25955386..25955410 (25 bp)
TGGAACGTTGTTTTGGTGTTCTAAT
NONE
Os.24884.1.A1_s_at--287--4871Chr03:25955421..25955445 (25 bp)
GCTAGTGATAGATAATTGGCCTCAA
NONE
Os.24884.1.A1_s_at--1094--6231Chr03:25957511..25957535 (25 bp)
GATGGAAACCCAGCTGAGTTACCAA
NONE
Os.24884.1.A1_s_at--660--10471Chr03:25957540..25957564 (25 bp)
TTACTTGATTTCTCTGTTGGAAGAT
NONE
Os.24884.1.A1_s_at--1112--8291Chr03:25957654..25957678 (25 bp)
GGCTTTACTGCATTCATAGTGAGGC
NONE
Os.24884.1.A1_s_at--764--3211Chr03:25957771..25957795 (25 bp)
CAAGGTTGAGTATGCCAGAGGTTTT
LOC_Os03g45990
Os.24884.1.A1_s_at--1057--5331Chr03:25957798..25957822 (25 bp)
GAAGTTCCTGTACCCTTCAGAAGTA
LOC_Os03g45990
Os.24884.1.A1_s_at--775--1451Chr03:25957816..25957840 (25 bp)
AGAAGTACCTGTGGACTTGCACGGT
LOC_Os03g45990
Target Sequence 
ATGGCAGGAGAAATATCGTGGCTTCAACTTATCCAATACAATACAAAAGTTGGAACGTTGTTTTGGTGTTCTAATAAACC
TAGAAGCTAGTGATAGATAATTGGCCTCAAAGGTGTAACAAAATTTCCCTGTAAACCTTGGTAAAGCCAGATAAATACAT
CCCGAGGTTCTTGCTAAAATGCTGATGGAAACCCAGCTGAGTTACCAAATTATTACTTGATTTCTCTGTTGGAAGATGGG
CTTTACTGCATTCATAGTGAGGCAAAGTCTTCTTTTGCACCCCATGGGATTAAATTATCAAATAGATTTGGCTGCCATGA
TGGCACAAAAGGACAATGTGCCTGCTAAAAAAGAACAAGGTTGAGTATGCCAGAGGTTTTTGGAAGTTCCTGTACCCTTC
AGAAGTACCTGTGGACTTGCACGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24884.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis