Browse Element(s) Details


Os.24887.2.S1_at

Description gb:AK101271.1
DB_XREF= gi:32986480
TID=Os.24887.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24887 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative DNA-damage-inducible protein P (B1131G08.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033032P22, full insert sequence.
FL= gb:AK101271.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5530011/11ImpB/MucB/SamB family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55260Os.9238.1.A2_at11/111+32133810..32138711ATPase, AAA family protein, expressed
LOC_Os01g55260Os.9238.1.A1_a_at10/111+32133810..32138711ATPase, AAA family protein, expressed
LOC_Os01g55270Os.9238.2.S1_at11/111+32138193..32141441SGS domain containing protein, expressed
LOC_Os01g55280Os.26380.2.S1_x_at11/111+32142365..32143622expressed protein
LOC_Os01g55290Os.23673.1.S1_at11/111+32152814..32157027pentatricopeptide, putative, expressed
LOC_Os01g55290Os.42075.1.A1_x_at11/111+32152814..32157027pentatricopeptide, putative, expressed
LOC_Os01g55300Os.24887.2.S1_at11/111+32157151..32163542ImpB/MucB/SamB family protein, expressed
LOC_Os01g55300Os.24887.3.S1_x_at11/111+32157151..32163542ImpB/MucB/SamB family protein, expressed
LOC_Os01g55300Os.24887.1.S1_at11/111+32157151..32163542ImpB/MucB/SamB family protein, expressed
LOC_Os01g55310Os.32263.2.S1_x_at10/111+32163022..32166484HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os01g55310Os.32263.1.S1_at9/111+32163022..32166484HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os01g55320NANA1+32167288..32168053heavy metal-associated domain containing protein, expressed
LOC_Os01g55330NANA1+32173237..32173632hypothetical protein
LOC_Os01g55340Os.4186.1.S1_a_at11/111+32177389..32178465Dof domain, zinc finger family protein, expressed
LOC_Os01g55350Os.22285.1.S1_a_at11/111+32186181..32191879Phosphoenolpyruvate carboxylase, housekeeping isozyme, putative, expressed
LOC_Os01g55350Os.45901.1.S1_x_at1/111+32186181..32191879Phosphoenolpyruvate carboxylase, housekeeping isozyme, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0006974biological_processresponse to DNA damage stimulus
GO:0010224biological_processresponse to UV-B
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24887.2.S1_at--18--1371Chr01:32163208..32163230 (23 bp)
AGAGCTATTCTCTGCAAGCGATTCC
LOC_Os01g55300
Os.24887.2.S1_at--261--3251Chr01:32163220..32163244 (25 bp)
CAAGCGATTCCTATACTGCTGTAAT
LOC_Os01g55300
Os.24887.2.S1_at--596--2411Chr01:32163251..32163275 (25 bp)
AAAACAGATGCTGCCAGCGTTTTCG
LOC_Os01g55300
Os.24887.2.S1_at--503--351Chr01:32163291..32163315 (25 bp)
ATAACCTGAGCATATAACTTCTGAG
LOC_Os01g55300
Os.24887.2.S1_at--406--351Chr01:32163304..32163328 (25 bp)
ATAACTTCTGAGATCATGCCAAGAG
LOC_Os01g55300
Os.24887.2.S1_at--335--8391Chr01:32163336..32163360 (25 bp)
GGCCATTTTATAACTTCGCGTGTTC
LOC_Os01g55300
Os.24887.2.S1_at--171--5531Chr01:32163364..32163388 (25 bp)
GAAAACTGGGAGGTCCAATGCATCC
LOC_Os01g55300
Os.24887.2.S1_at--646--3191Chr01:32163379..32163403 (25 bp)
CAATGCATCCCTTGCAATGGCTTGA
LOC_Os01g55300
Os.24887.2.S1_at--233--5191Chr01:32163392..32163416 (25 bp)
GCAATGGCTTGATCTTCGTCAGTTA
LOC_Os01g55300
Os.24887.2.S1_at--692--6411Chr01:32163402..32163426 (25 bp)
GATCTTCGTCAGTTATGGCCAATGC
LOC_Os01g55300
Os.24887.2.S1_at--693--4931Chr01:32163425..32163449 (25 bp)
GCTTGTGATATATTTTCCTGCATAG
LOC_Os01g55300
Target Sequence 
AGAGCTATTCTCTGCAAGCGATTCCTATACTGCTGTAATTCAAGGAAAACAGATGCTGCCAGCGTTTTCGCTTGCTAATT
AAACAATAACCTGAGCATATAACTTCTGAGATCATGCCAAGAGAGCAGAAGGCCATTTTATAACTTCGCGTGTTCAGAGA
AAACTGGGAGGTCCAATGCATCCCTTGCAATGGCTTGATCTTCGTCAGTTATGGCCAATGCTTGTGATATATTTTCCTGC
ATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24887.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis