Browse Element(s) Details


Os.24932.3.S1_x_at

Description gb:NM_196690.1
DB_XREF= gi:37534739
TID=Os.24932.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.24932 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative splicing factor-like protein (OSJNBb0016G17.19), mRNA.
PROD=putative splicing factor-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3037010/11splicing factor, CC1-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30340OsAffx.8085.1.S1_at11/1110+15425482..15426498Alpha-expansin 11 precursor, putative, expressed
LOC_Os10g30340OsAffx.8085.1.S1_x_at11/1110+15425482..15426498Alpha-expansin 11 precursor, putative, expressed
LOC_Os10g30350Os.8015.1.S1_at2/1110+15438028..15443253BTB/POZ domain containing protein
LOC_Os10g30360OsAffx.30608.1.S1_at10/1110+15445177..15446072MATH domain containing protein
LOC_Os10g30370Os.24932.3.S1_x_at10/1110+15451118..15458614splicing factor, CC1-like family protein, expressed
LOC_Os10g30380OsAffx.30609.1.S1_at11/1110+15460336..15463074Cytochrome P450 family protein
LOC_Os10g30390OsAffx.20305.1.S1_at11/1110+15466886..15470494Cytochrome P450 family protein, expressed
LOC_Os10g30399NANA10+15475440..15475719NA
LOC_Os10g30410Os.46533.1.S1_at11/1110+15477261..15481625Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24932.3.S1_x_at--430--6131NONE
GAGTGGCACTGCAACCAGCATAACT
NONE
Os.24932.3.S1_x_at--1105--2071Chr10:15457245..15457269 (25 bp)
ACATCTGTTGAGTTACCGTCTGCAT
LOC_Os10g30370
Os.24932.3.S1_x_at--563--1231Chr10:15457334..15457358 (25 bp)
AGTTCCTGGCATACAAATTCCTGGT
LOC_Os10g30370
Os.24932.3.S1_x_at--305--2251Chr10:15457348..15457372 (25 bp)
AAATTCCTGGTACTCAATCTGCAGA
LOC_Os10g30370
Os.24932.3.S1_x_at--792--3051Chr10:15457363..15457387 (25 bp)
AATCTGCAGATATTGGTTCACCTAC
LOC_Os10g30370
Os.24932.3.S1_x_at--399--7891Chr10:15457377..15457401 (25 bp)
GGTTCACCTACTGAGTTTCTATTGC
LOC_Os10g30370
Os.24932.3.S1_x_at--35--751Chr10:15457410..15457430 (21 bp)
ATGTTTGACCCTGCAGTGGAGACAG
LOC_Os10g30370
Os.24932.3.S1_x_at--938--4871Chr10:15458112..15458136 (25 bp)
GCTTTGTGTACCTTCATTTCGACAG
LOC_Os10g30370
Os.24932.3.S1_x_at--976--191Chr10:15458127..15458151 (25 bp)
ATTTCGACAGTGTAGCAGCTGCGAC
LOC_Os10g30370
Os.24932.3.S1_x_at--63--2611Chr10:15458160..15458184 (25 bp)
AACGCGCACTGCATGGTAGATGGTT
LOC_Os10g30370
Os.24932.3.S1_x_at--357--6291Chr10:15458194..15458215 (22 bp)
GATGATTACAGCGACCTTTATGACT
LOC_Os10g30370
Target Sequence 
GAGTGGCACTGCAACCAGCATAACTGGTGGTATTGGTATTCCTGGTGTGAACACATCTGTTGAGTTACCGTCTGCATCGG
TTACTGGTGCTCCTCTGCCAACCACTTCACTCATACAACCAACAATACCTGCTATTGGAACAGTTCCTGGCATACAAATT
CCTGGTACTCAATCTGCAGATATTGGTTCACCTACTGAGTTTCTATTGCTGAAGAACATGTTTGACCCTGCAGTGGAGAC
AGATCCTGATTTTGATTTGGATATTAAAGATGATGTCCAGGATGAATGCTCAAAGTTTGGTGCAGTAAATCACATTTTTG
TTGACAAAAATACTGCTGGCTTTGTGTACCTTCATTTCGACAGTGTAGCAGCTGCGACAGCTGCTCAACGCGCACTGCAT
GGTAGATGGTTCGCAGGAAAGATGATTACAGCGACCTTTATGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24932.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis