Browse Element(s) Details


Os.24936.1.A1_at

Description gb:CA763113
DB_XREF= gi:25807152
DB_XREF=BR060002A10D03.ab1
CLONE=BR060002A10D03.ab1
TID=Os.24936.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.24936 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g239109/11Histone-like transcription factor and archaeal histone family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23870NANA5+13645973..13648082transposon protein, putative, Mutator sub-class
LOC_Os05g23880Os.27405.1.S1_at9/115+13656584..13662481Lipoxygenase family protein, expressed
LOC_Os05g23880OsAffx.10342.1.S1_x_at1/115+13656584..13662481Lipoxygenase family protein, expressed
LOC_Os05g23890NANA5+13662507..13664470retrotransposon protein, putative, LINE subclass
LOC_Os05g23900OsAffx.26989.1.S1_at11/115+13667941..13668614hypothetical protein
LOC_Os05g23910OsAffx.26990.1.S1_at11/115+13671818..13673285Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os05g23910Os.24936.1.A1_at9/115+13671818..13673285Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os05g23924Os.9795.1.S1_at11/115+13677444..13685352Glycosyl hydrolase family 10 protein, expressed
LOC_Os05g23924OsAffx.26991.1.S1_at10/115+13677444..13685352Glycosyl hydrolase family 10 protein, expressed
LOC_Os05g23924Os.12284.1.S1_at1/115+13677444..13685352Glycosyl hydrolase family 10 protein, expressed
LOC_Os05g23940Os.12931.1.S1_at11/115+13694317..13703825Transcription factor TFIIB repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0016602cellular_componentCCAAT-binding factor complex
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24936.1.A1_at--503--691Chr05:13673053..13673077 (25 bp)
ATGAGAAATAATTTCCTCCATTTAT
LOC_Os05g23910
Os.24936.1.A1_at--1011--6191Chr05:13673091..13673115 (25 bp)
GAGGAATACAACAATGGCAACGATA
LOC_Os05g23910
Os.24936.1.A1_at--100--8511Chr05:13673105..13673129 (25 bp)
TGGCAACGATATTCATGATGGTAAT
LOC_Os05g23910
Os.24936.1.A1_at--580--231NONE
ATATTCATGATGGTAATTTTTCCAA
NONE
Os.24936.1.A1_at--796--4371Chr05:13673134..13673158 (25 bp)
CCAAATCAAGCAACAGTATCAAGAA
LOC_Os05g23910
Os.24936.1.A1_at--55--5151NONE
GCAACAGTATCAAGAATTCCTAAAT
NONE
Os.24936.1.A1_at--707--371Chr05:13673177..13673201 (25 bp)
ATCAAAGGAGGATGCATCTTAGCTA
LOC_Os05g23910
Os.24936.1.A1_at--39--8031Chr05:13673183..13673207 (25 bp)
GGAGGATGCATCTTAGCTATGTTTA
LOC_Os05g23910
Os.24936.1.A1_at--155--4971Chr05:13673190..13673214 (25 bp)
GCATCTTAGCTATGTTTATCCAATG
LOC_Os05g23910
Os.24936.1.A1_at--565--4871Chr05:13673198..13673222 (25 bp)
GCTATGTTTATCCAATGATGTTGTA
LOC_Os05g23910
Os.24936.1.A1_at--642--4371Chr05:13673209..13673233 (25 bp)
CCAATGATGTTGTATAGTTTACCTT
LOC_Os05g23910
Target Sequence 
ATGAGAAATAATTTCCTCCATTTATTTAGAATATGGAAGAGGAATACAACAATGGCAACGATATTCATGATGGTAATTTT
TCCAAATCAAGCAACAGTATCAAGAATTCCTAAATAAACAACAAATCAAAGGAGGATGCATCTTAGCTATGTTTATCCAA
TGATGTTGTATAGTTTACCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24936.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis