Browse Element(s) Details


Os.24951.1.S1_at

Description gb:AK073411.1
DB_XREF= gi:32983434
TID=Os.24951.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24951 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033041P20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033041P20, full insert sequence.
FL= gb:AK073411.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3740011/11PROLIFERA protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37340NANA12+22894634..22900732retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g37350NANA12+22901276..22903277Lipoxygenase 2.2, chloroplast precursor, putative
LOC_Os12g37360Os.15435.1.S1_at11/1112+22906210..22910151GTP-binding protein SAR1A, putative, expressed
LOC_Os12g37370Os.36925.1.A1_at11/1112+22913089..22914534DNA-directed RNA polymerase II 14.5 kDa polypeptide, putative, expressed
LOC_Os12g37380Os.32935.1.S1_at11/1112+22915206..22917555RNA pseudouridylate synthase, putative, expressed
LOC_Os12g37390Os.4910.1.S1_at11/1112+22918164..22920305expressed protein
LOC_Os12g37400Os.24951.1.S1_at11/1112+22920535..22925863PROLIFERA protein, putative, expressed
LOC_Os12g37410Os.8070.1.S1_at11/1112+22933838..22935119Ocs-element binding factor 1, putative, expressed
LOC_Os12g37430Os.15323.1.S1_at11/1112+22939384..22942646PAPA-1-like conserved region family protein, expressed
LOC_Os12g37430Os.15323.1.S2_at10/1112+22939384..22942646PAPA-1-like conserved region family protein, expressed
LOC_Os12g37440NANA12+22946801..22948797hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006270biological_processDNA replication initiation
GO:0010182biological_processsugar mediated signaling
GO:0003677molecular_functionDNA binding
GO:0005524molecular_functionATP binding
GO:0008094molecular_functionDNA-dependent ATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24951.1.S1_at--1036--7991Chr12:22921172..22921196 (25 bp)
GGATGTCAGATATGCTCATGCCCTT
LOC_Os12g37400
Os.24951.1.S1_at--970--9611Chr12:22921157..22921181 (25 bp)
TCATGCCCTTAACTTGATCTCCAGA
LOC_Os12g37400
Os.24951.1.S1_at--801--4611Chr12:22921009..22921033 (25 bp)
GCGAGGCTCAACTGAAGGAATGCTT
LOC_Os12g37400
Os.24951.1.S1_at--747--4931Chr12:22920988..22921012 (25 bp)
GCTTGGAGGAGTATGCTTCCCTGAA
LOC_Os12g37400
Os.24951.1.S1_at--1000--4911Chr12:22920974..22920998 (25 bp)
GCTTCCCTGAATGTTTGGCAGATCC
LOC_Os12g37400
Os.24951.1.S1_at--110--1791Chr12:22920949..22920973 (25 bp)
ACCCCAACACCTTTGATATCCATTT
LOC_Os12g37400
Os.24951.1.S1_at--723--6491Chr12:22920935..22920959 (25 bp)
GATATCCATTTCATCGACGCGTAAT
LOC_Os12g37400
Os.24951.1.S1_at--351--1231Chr12:22920873..22920897 (25 bp)
AGTTCTAACATACCCATGATGAGCT
LOC_Os12g37400
Os.24951.1.S1_at--849--5391Chr12:22920826..22920850 (25 bp)
GAAGCTCCAGGAAGTTGTGACCATG
LOC_Os12g37400
Os.24951.1.S1_at--431--5871Chr12:22920677..22920701 (25 bp)
GAGCCATTGCTATCATTGTCCACCT
LOC_Os12g37400
Os.24951.1.S1_at--38--10391Chr12:22920633..22920657 (25 bp)
TTTTCAGCCATATTCTTGACTCTTG
LOC_Os12g37400
Target Sequence 
GGATGTCAGATATGCTCATGCCCTTAACTTGATCTCCAGAAAGGGTTACAGCGAGGCTCAACTGAAGGAATGCTTGGAGG
AGTATGCTTCCCTGAATGTTTGGCAGATCCACCCCAACACCTTTGATATCCATTTCATCGACGCGTAATGCAGGAAGAAT
TGATCGATCGATCTCCTCTCCTTCAAAGTTCTAACATACCCATGATGAGCTCATGATGGAAAATCTAGAGTTTGAAGCTC
CAGGAAGTTGTGACCATGGCTAGGGAAGCCATTGATCAAGGTCTAACAAGGCTGTAAAAGTACTAGGGATCTTAGATAAA
CTATAATTTTCAATGATGTTATTCTGGGTAGATGTAGCCTGTGAGAAATGTATTAGTAGAGGGAGCCATTGCTATCATTG
TCCACCTTGNGAGAAGCATTGTGGNTTTTTTCAGCCATATTCTTGACTCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24951.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis