Browse Element(s) Details


Os.24968.1.S1_at

Description gb:AK064408.1
DB_XREF= gi:32974426
TID=Os.24968.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.24968 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-110-A02, full insert sequence.
FL= gb:AK064408.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1353010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13510OsAffx.11035.1.S1_at11/111+7540473..7541312hypothetical protein
LOC_Os01g13520Os.22269.1.S1_at11/111+7543747..7548677Auxin response factor family protein, expressed
LOC_Os01g13520Os.22269.2.S1_x_at11/111+7543747..7548677Auxin response factor family protein, expressed
LOC_Os01g13530Os.24968.1.S1_at10/111+7554140..7557427expressed protein
LOC_Os01g13530Os.24968.2.S1_at2/111+7554140..7557427expressed protein
LOC_Os01g13540Os.3838.1.S1_at11/111+7568038..7573616RWP-RK domain containing protein, expressed
LOC_Os01g13550Os.3839.1.S1_at11/111+7574896..7579302Glycosyl hydrolase family 14 protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24968.1.S1_at--875--7671Chr01:7557119..7557143 (25 bp)
GGGTTCCTCAAATCATTGCTCACAA
LOC_Os01g13530
Os.24968.1.S1_at--388--431Chr01:7557130..7557154 (25 bp)
ATCATTGCTCACAAGGCGTCGGTGG
LOC_Os01g13530
Os.24968.1.S1_at--255--2591Chr01:7557158..7557182 (25 bp)
AACGATGAGTCATTGTACAGCTACT
LOC_Os01g13530
Os.24968.1.S1_at--579--7031Chr01:7557172..7557196 (25 bp)
GTACAGCTACTTGGACGAATATTGA
LOC_Os01g13530
Os.24968.1.S1_at--632--6771Chr01:7557207..7557231 (25 bp)
GTTACTGTTAACCAACTCTCACTTG
LOC_Os01g13530
Os.24968.1.S1_at--370--8851Chr01:7557249..7557273 (25 bp)
TGAGATTTTAGCTTTTTTGTCCAAA
LOC_Os01g13530
Os.24968.1.S1_at--462--3591Chr01:7557280..7557304 (25 bp)
CATTTTCGCCTTATCTTTCTATCAT
LOC_Os01g13530
Os.24968.1.S1_at--564--2991NONE
AATGAGGGCCTATCACCAGTGTTGC
NONE
Os.24968.1.S1_at--847--8271Chr01:7557350..7557374 (25 bp)
GGCATTGCGCAAGTGTATCCATCAG
LOC_Os01g13530
Os.24968.1.S1_at--936--7431Chr01:7557362..7557386 (25 bp)
GTGTATCCATCAGCAACTACTAAGC
LOC_Os01g13530
Os.24968.1.S1_at--536--6751Chr01:7557388..7557412 (25 bp)
GTTCAGATAAGCTTTCCCAATTCCA
LOC_Os01g13530
Target Sequence 
GGGTTCCTCAAATCATTGCTCACAAGGCGTCGGTGGAGGAACGATGAGTCATTGTACAGCTACTTGGACGAATATTGATT
TNTTAAATGTTACTGTTAACCAACTCTCACTTGTTCACTTATNTGATATTTGAGATTTTAGCTTTTTTGTCCAAANGGAG
GCATTTTCGCCTTATCTTTCTATCATTTTCATGTGTGTATACAATGAGGGCCTATCACCAGTGTTGCTAATGGCATTGCG
CAAGTGTATCCATCAGCAACTACTAAGCTGTTCAGATAAGCTTTCCCAATTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24968.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis