Browse Element(s) Details


Os.24974.1.S1_a_at

Description gb:AK101188.1
DB_XREF= gi:32986397
TID=Os.24974.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.24974 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033030D20, full insert sequence.
FL= gb:AK101572.1 gb:AK101188.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1069011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10660OsAffx.23190.2.S1_at11/111+5690466..5690792hypothetical protein
LOC_Os01g10660OsAffx.23190.1.S1_at1/111+5690466..5690792hypothetical protein
LOC_Os01g10670OsAffx.23190.3.S1_x_at11/111+5692075..5692386hypothetical protein
LOC_Os01g10670OsAffx.23190.3.S1_s_at11/111+5692075..5692386hypothetical protein
LOC_Os01g10680Os.33166.1.S1_at11/111+5696454..5704560expressed protein
LOC_Os01g10690Os.24974.1.S1_a_at11/111+5715703..5720986expressed protein
LOC_Os01g10700OsAffx.10999.1.S1_x_at11/111+5724128..5726558D-mannose binding lectin family protein
LOC_Os01g10710OsAffx.23191.1.S1_at11/111+5728585..5731122D-mannose binding lectin family protein
LOC_Os01g10720NANA1+5733101..5737553retrotransposon protein, putative, unclassified
LOC_Os01g10729OsAffx.9946.1.S1_at4/111+5741029..5741364NA
LOC_Os01g10740OsAffx.22126.1.S1_at5/111+5745671..5746072hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24974.1.S1_a_at--831--5311Chr01:5716208..5716232 (25 bp)
GAAGGTATAAGCCTTCTCGCTTATC
LOC_Os01g10690
Os.24974.1.S1_a_at--1124--2651Chr01:5716200..5716224 (25 bp)
AAGCCTTCTCGCTTATCTGACAGAG
LOC_Os01g10690
Os.24974.1.S1_a_at--672--4311Chr01:5716197..5716221 (25 bp)
CCTTCTCGCTTATCTGACAGAGTTA
LOC_Os01g10690
Os.24974.1.S1_a_at--732--3411Chr01:5716180..5716204 (25 bp)
CAGAGTTATTCAGGAAGGAGTATCT
LOC_Os01g10690
Os.24974.1.S1_a_at--1097--2911Chr01:5716166..5716190 (25 bp)
AAGGAGTATCTGTTGTTGCCCTGGC
LOC_Os01g10690
Os.24974.1.S1_a_at--781--1191Chr01:5716162..5716186 (25 bp)
AGTATCTGTTGTTGCCCTGGCTAAA
LOC_Os01g10690
Os.24974.1.S1_a_at--650--8791Chr01:5716153..5716177 (25 bp)
TGTTGCCCTGGCTAAAGCTACCGTG
LOC_Os01g10690
Os.24974.1.S1_a_at--510--8451Chr01:5716145..5716169 (25 bp)
TGGCTAAAGCTACCGTGCCAAGCTC
LOC_Os01g10690
Os.24974.1.S1_a_at--605--8231Chr01:5716117..5716141 (25 bp)
GGCAACTGTAGTATTAATTGATTCA
LOC_Os01g10690
Os.24974.1.S1_a_at--135--3431Chr01:5716086..5716110 (25 bp)
CAGACCAGCATGTTTCAGAATTCAG
LOC_Os01g10690
Os.24974.1.S1_a_at--14--8811Chr01:5716034..5716058 (25 bp)
TGATTTTGTACTGGTACTACTACCC
LOC_Os01g10690
Target Sequence 
GAAGGTATAAGCCTTCTCGCTTATCTGACAGAGTTATTCAGGAAGGAGTATCTGTTGTTGCCCTGGCTAAAGCTACCGTG
CCAAGCTCCCAGGCAACTGTAGTATTAATTGATTCAAGTAAACAGACCAGCATGTTTCAGAATTCAGAAGCTCACTTGCT
GTACATATCCTGTGTGATTTTGTACTGGTACTACTACCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24974.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis