Browse Element(s) Details


Os.25002.1.S1_at

Description gb:AK107250.1
DB_XREF= gi:32992459
TID=Os.25002.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25002 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-127-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-125-G02, full insert sequence.
FL= gb:AK107380.1 gb:AK107250.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1676011/11Protein phosphatase 2C containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16709NANA3+9239122..9239870hypothetical protein
LOC_Os03g16718OsAffx.3253.1.S1_at11/113+9240323..9244394hypothetical protein
LOC_Os03g16718OsAffx.31578.4.S1_at10/113+9240323..9244394hypothetical protein
LOC_Os03g16718Os.3192.1.S1_at1/113+9240323..9244394hypothetical protein
LOC_Os03g16730Os.53240.1.A1_x_at11/113+9245130..9249712expressed protein
LOC_Os03g16730OsAffx.3254.1.S1_at8/113+9245130..9249712expressed protein
LOC_Os03g16740Os.20802.1.S1_at11/113+9248664..9252631Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os03g16740Os.55715.1.S1_at1/113+9248664..9252631Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os03g16750NANA3+9257616..9260219hypothetical protein
LOC_Os03g16760Os.25002.1.S1_at11/113+9264379..9267908Protein phosphatase 2C containing protein, expressed
LOC_Os03g16770OsAffx.12885.1.S1_at11/113+9272855..9274164hypothetical protein
LOC_Os03g16780Os.11179.1.S1_at11/113+9275906..9279030ankyrin repeat family protein, putative, expressed
LOC_Os03g16790Os.27072.1.S1_at9/113+9286561..9291731DHHC zinc finger domain containing protein, expressed
LOC_Os03g16800Os.6755.1.S1_a_at11/113+9292814..9295735Clathrin assembly protein, putative, expressed
LOC_Os03g16800Os.6755.1.S1_at11/113+9292814..9295735Clathrin assembly protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009934biological_processregulation of meristem organization
GO:0005634cellular_componentnucleus
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25002.1.S1_at--378--8171Chr03:9267336..9267360 (25 bp)
GGAACTACCATGACGACGTGTCCAT
LOC_Os03g16760
Os.25002.1.S1_at--253--6031Chr03:9267391..9267415 (25 bp)
GAGATCGTCCGTTTAGGCTTTGCCA
LOC_Os03g16760
Os.25002.1.S1_at--940--10091Chr03:9267404..9267428 (25 bp)
TAGGCTTTGCCAGGCCTGAACAAAC
LOC_Os03g16760
Os.25002.1.S1_at--843--2771Chr03:9267443..9267467 (25 bp)
AAGAGAGTCGGATGCCTTGCTTCGT
LOC_Os03g16760
Os.25002.1.S1_at--1037--5111Chr03:9267564..9267588 (25 bp)
GCACATGTGCTGATCTCCTAAAAAA
LOC_Os03g16760
Os.25002.1.S1_at--958--771Chr03:9267634..9267658 (25 bp)
ATGTGCCATGATCGAACTGCCTAGT
LOC_Os03g16760
Os.25002.1.S1_at--576--10371Chr03:9267703..9267727 (25 bp)
TTTTTTGCCGAAACTGCTGTACATA
LOC_Os03g16760
Os.25002.1.S1_at--304--351Chr03:9267816..9267840 (25 bp)
ATAACTGCTGTGTTTGTCGGTCTCA
LOC_Os03g16760
Os.25002.1.S1_at--789--7191Chr03:9267831..9267855 (25 bp)
GTCGGTCTCAACAAGCCAATTCTGG
LOC_Os03g16760
Os.25002.1.S1_at--820--4031Chr03:9267859..9267883 (25 bp)
CGATTCGGATTACCTTAGCAGCAAT
LOC_Os03g16760
Os.25002.1.S1_at--334--7591Chr03:9267884..9267908 (25 bp)
GGGCAGGATTCCTATTGCTGAAACC
LOC_Os03g16760
Target Sequence 
GGAACTACCATGACGACGTGTCCATCATCGTCATGTCGTTCGAGGGGAGGATATGGAGATCGTCCGTTTAGGCTTTGCCA
GGCCTGAACAAACGCCAGAAGCTTCAGAAGAGAGTCGGATGCCTTGCTTCGTTTAGGCTATAGTAGGCTACAGTAGACAT
CGGAAAAGGCAAAACAAAACAGTAGTAGTGCCCAAGCACATGTGCTCAACACCTNAAAAAAAAAAAGAGCACATGTGCTG
ATCTCCTAAAAAAANNNAAAAAAAAAAAGAGAAAGAAAACCAACAAGTGCATAAGCTGATGTGCCATGATCGAACTGCCT
AGTTCGAATCATGTGTTCTTCTTTGTTTGTTTGTTTTGTTTTTTTTTTTTTGCCGAAACTGCTGTACATAGTTCGGCAGG
AGGAATGATGGTAGGTTCATGTAATTAGGTTTTTCGGCATGATGGCGATATAAAGAAGAAGAAAGCATATGCCCAATAAT
AACTGCTGTGTTTGTCGGTCTCAACAAGCCAATTCTGGAATCGATTCGGATTACCTTAGCAGCAATGGGCAGGATTCCTA
TTGCTGAAACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25002.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis