Browse Element(s) Details


Os.25006.1.A1_at

Description gb:AK069366.1
DB_XREF= gi:32979390
TID=Os.25006.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25006 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023012B21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023012B21, full insert sequence.
FL= gb:AK069366.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5399011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53950Os.7566.1.S1_at11/114+31926616..31928467Glycosyl hydrolases family 16 protein, expressed
LOC_Os04g53960NANA4+31932266..31933038retrotransposon protein, putative, unclassified
LOC_Os04g53970OsAffx.26593.1.S1_at10/114+31933786..31936082hypothetical protein
LOC_Os04g53980Os.20602.2.S1_x_at11/114+31944431..31946611hAT family dimerisation domain containing protein
LOC_Os04g53990Os.25006.1.A1_at11/114+31947661..31950512expressed protein
LOC_Os04g53994Os.57529.1.S1_at11/114+31954508..31958289D-mannose binding lectin family protein, expressed
LOC_Os04g53998Os.49500.1.S1_at11/114+31959768..31963106D-mannose binding lectin family protein, expressed
LOC_Os04g54002Os.20532.1.S1_at10/114+31970352..31974125D-mannose binding lectin family protein, expressed
LOC_Os04g54010Os.20531.1.S1_at10/114+31974718..31977883Protein kinase domain containing protein, expressed
LOC_Os04g54010OsAffx.30180.4.S1_x_at1/114+31974718..31977883Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25006.1.A1_at--1122--5091Chr04:31949935..31949959 (25 bp)
GCACGGCGAGATATCACTGAAGGGC
LOC_Os04g53990
Os.25006.1.A1_at--948--4871Chr04:31949965..31949989 (25 bp)
GCTTTGTCTGGTGCCGATATCGAGC
LOC_Os04g53990
Os.25006.1.A1_at--674--7291Chr04:31950011..31950035 (25 bp)
GTGCCCGTCGAGCTGTGGACTCCAT
LOC_Os04g53990
Os.25006.1.A1_at--826--8111Chr04:31950027..31950051 (25 bp)
GGACTCCATTTGGTGCCAACTTTAT
LOC_Os04g53990
Os.25006.1.A1_at--775--6931Chr04:31950055..31950079 (25 bp)
GTAGAAGAACAAGTCCTGGAACTGA
LOC_Os04g53990
Os.25006.1.A1_at--1056--631Chr04:31950195..31950219 (25 bp)
ATGATGATAATTTCGTAACCCTAGT
LOC_Os04g53990
Os.25006.1.A1_at--916--7051Chr04:31950209..31950233 (25 bp)
GTAACCCTAGTAGTACTGATGCTGT
LOC_Os04g53990
Os.25006.1.A1_at--560--7071Chr04:31950238..31950262 (25 bp)
GTAATCAGCAAAGCACTGAGCTAGT
LOC_Os04g53990
Os.25006.1.A1_at--192--4871Chr04:31950257..31950281 (25 bp)
GCTAGTTAGCTAGATGAACCTTTGG
LOC_Os04g53990
Os.25006.1.A1_at--415--8991Chr04:31950271..31950295 (25 bp)
TGAACCTTTGGAATGAGTGCTTGAA
LOC_Os04g53990
Os.25006.1.A1_at--622--9771Chr04:31950480..31950504 (25 bp)
TAATGTAGCAGGTTTCTCTCTGTTG
LOC_Os04g53990
Target Sequence 
GCACGGCGAGATATCACTGAAGGGCCGGGGGCTTTGTCTGGTGCCGATATCGAGCACGTTNGCCGTTGCCAGCGAGGTGC
CCGTCGAGCTGTGGACTCCATTTGGTGCCAACTTTATTAGGTAGAAGAACAAGTCCTGGAACTGAAGAACNCTGATCAGA
AGCGTCAAATTAACGATCGAGTAGCTAGCTGCTAATATAGTNGCCTAGCTAGCNCAAATCGAGATNTGATGTTTCTTGAT
TGTATNTACGTACTAGTTGTATGATGATAATTTCGTAACCCTAGTAGTACTGATGCTGTGNCTGTAATCAGCAAAGCACT
GAGCTAGTTAGCTAGATGAACCTTTGGAATGAGTGCTTGAAGACTTGGATTCATTNTTCAGGTTCATCACAGAATAAGGA
ATNGGCTAGTTGAGAGGGGACANAATTATGTACTGATCATCATCAGGTTCTTATGATTGGTTGNTAGGTTGCATCGTATC
ANTGAGTAGTTGCGGAAGAATTTGTTANAGAATTGATGGNTCGATTNANNNNATGGTGGATCNAATNAAGTAATGTAGCA
GGTTTCTCTCTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25006.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis