Browse Element(s) Details


Os.7566.1.S1_at

Description gb:AK059277.1
DB_XREF= gi:32969295
TID=Os.7566.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7566 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033024P08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-025-C07, full insert sequence.
FL= gb:AK059277.1 gb:AK099331.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5395011/11Glycosyl hydrolases family 16 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53900Os.24831.4.S1_x_at7/114+31902952..31905665retrotransposon protein, putative, unclassified
LOC_Os04g53900Os.24831.1.S1_x_at4/114+31902952..31905665retrotransposon protein, putative, unclassified
LOC_Os04g53900Os.24831.3.S1_x_at4/114+31902952..31905665retrotransposon protein, putative, unclassified
LOC_Os04g53900Os.24831.3.S1_s_at1/114+31902952..31905665retrotransposon protein, putative, unclassified
LOC_Os04g53910NANA4+31909040..31909746retrotransposon protein, putative, unclassified
LOC_Os04g53920Os.35386.1.S1_at2/114+31912935..31916324NAD dependent epimerase/dehydratase family protein
LOC_Os04g53930Os.8593.1.S1_at11/114+31918769..31921931organic anion transporter, putative, expressed
LOC_Os04g53940OsAffx.14401.1.S1_at11/114+31922337..31922576hypothetical protein
LOC_Os04g53950Os.7566.1.S1_at11/114+31926616..31928467Glycosyl hydrolases family 16 protein, expressed
LOC_Os04g53960NANA4+31932266..31933038retrotransposon protein, putative, unclassified
LOC_Os04g53970OsAffx.26593.1.S1_at10/114+31933786..31936082hypothetical protein
LOC_Os04g53980Os.20602.2.S1_x_at11/114+31944431..31946611hAT family dimerisation domain containing protein
LOC_Os04g53990Os.25006.1.A1_at11/114+31947661..31950512expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
GO:0009740biological_processgibberellic acid mediated signaling
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0005618cellular_componentcell wall
GO:0005737cellular_componentcytoplasm
GO:0016762molecular_functionxyloglucan:xyloglucosyl transferase activity
GO:0016798molecular_functionhydrolase activity, acting on glycosyl bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7566.1.S1_at--1055--451Chr04:31928122..31928146 (25 bp)
ATCTCGTCGCCGGTTAGGATGGATC
LOC_Os04g53950
Os.7566.1.S1_at--41--6251Chr04:31928151..31928175 (25 bp)
GATGGAACTGCTGGTTTCTTTCTTG
LOC_Os04g53950
Os.7566.1.S1_at--102--2311Chr04:31928187..31928211 (25 bp)
AAATGGCAGGTAGTTTATCTCAGAT
LOC_Os04g53950
Os.7566.1.S1_at--255--6751Chr04:31928229..31928253 (25 bp)
GTTCATCGTAATTCTGTGTCTCTGT
LOC_Os04g53950
Os.7566.1.S1_at--1001--2391Chr04:31928269..31928293 (25 bp)
AAAAATTGTTACTCGGCTTCCACTG
LOC_Os04g53950
Os.7566.1.S1_at--697--191Chr04:31928312..31928336 (25 bp)
ATTTCTTCAGTCTTCCGATCTGGAC
LOC_Os04g53950
Os.7566.1.S1_at--186--6411Chr04:31928328..31928352 (25 bp)
GATCTGGACGATGCTCACTTTTAAC
LOC_Os04g53950
Os.7566.1.S1_at--352--5771Chr04:31928334..31928358 (25 bp)
GACGATGCTCACTTTTAACTTCAAA
LOC_Os04g53950
Os.7566.1.S1_at--998--651Chr04:31928364..31928388 (25 bp)
ATGCAAATGCCCAATGCCATCATTC
LOC_Os04g53950
Os.7566.1.S1_at--436--3031Chr04:31928376..31928400 (25 bp)
AATGCCATCATTCATTCATTTGGTC
LOC_Os04g53950
Os.7566.1.S1_at--353--1971Chr04:31928442..31928466 (25 bp)
ACTGATGTATTGATGGCTTTAATTC
LOC_Os04g53950
Target Sequence 
ATCTCGTCGCCGGTTAGGATGGATCGATGGATGGAACTGCTGGTTTCTTTCTTGGTTAGCAAATCAAATGGCAGGTAGTT
TATCTCAGATGAACTTAGGTGATGGTAGTTCATCGTAATTCTGTGTCTCTGTGGGGGTGTATCTGTAAAAAATTGTTACT
CGGCTTCCACTGCTGTTCTGCTGCTGCTGCATTTCTTCAGTCTTCCGATCTGGACGATGCTCACTTTTAACTTCAAATCG
AAATGCAAATGCCCAATGCCATCATTCATTCATTTGGTCCTCCTNACGGTGAAAAATCAATGAATGCCATCTGAAAGATN
ACTGATGTATTGATGGCTTTAATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7566.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis