Browse Element(s) Details


Os.8593.1.S1_at

Description gb:AK121883.1
DB_XREF= gi:37991506
TID=Os.8593.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.8593 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033104P11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033104P11, full insert sequence.
FL= gb:AK121883.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5393011/11organic anion transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53890OsAffx.447.1.S1_at3/114+31894000..31898550retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g53890Os.52609.1.S1_at1/114+31894000..31898550retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g53890OsAffx.22947.2.S1_x_at1/114+31894000..31898550retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g53900Os.24831.4.S1_x_at7/114+31902952..31905665retrotransposon protein, putative, unclassified
LOC_Os04g53900Os.24831.1.S1_x_at4/114+31902952..31905665retrotransposon protein, putative, unclassified
LOC_Os04g53900Os.24831.3.S1_x_at4/114+31902952..31905665retrotransposon protein, putative, unclassified
LOC_Os04g53900Os.24831.3.S1_s_at1/114+31902952..31905665retrotransposon protein, putative, unclassified
LOC_Os04g53910NANA4+31909040..31909746retrotransposon protein, putative, unclassified
LOC_Os04g53920Os.35386.1.S1_at2/114+31912935..31916324NAD dependent epimerase/dehydratase family protein
LOC_Os04g53930Os.8593.1.S1_at11/114+31918769..31921931organic anion transporter, putative, expressed
LOC_Os04g53940OsAffx.14401.1.S1_at11/114+31922337..31922576hypothetical protein
LOC_Os04g53950Os.7566.1.S1_at11/114+31926616..31928467Glycosyl hydrolases family 16 protein, expressed
LOC_Os04g53960NANA4+31932266..31933038retrotransposon protein, putative, unclassified
LOC_Os04g53970OsAffx.26593.1.S1_at10/114+31933786..31936082hypothetical protein
LOC_Os04g53980Os.20602.2.S1_x_at11/114+31944431..31946611hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8593.1.S1_at--60--1431Chr04:31921534..31921558 (25 bp)
AGAACAAGCCCATGTACGACACCAT
LOC_Os04g53930
Os.8593.1.S1_at--257--5971Chr04:31921578..31921602 (25 bp)
GAGAAGACCCTCCTAAAATGATCAT
LOC_Os04g53930
Os.8593.1.S1_at--586--111Chr04:31921628..31921652 (25 bp)
ATTCTGCTCGGAATCGGCGGGAATT
LOC_Os04g53930
Os.8593.1.S1_at--184--8631Chr04:31921652..31921676 (25 bp)
TGGTGGATTCTTCTACGTGTTGGTC
LOC_Os04g53930
Os.8593.1.S1_at--809--8591Chr04:31921672..31921696 (25 bp)
TGGTCGCTCGTGCAACCGGAGACAA
LOC_Os04g53930
Os.8593.1.S1_at--149--10371Chr04:31921712..31921736 (25 bp)
TTTTCCGCTGGAAACACCGTGTTTG
LOC_Os04g53930
Os.8593.1.S1_at--797--5531Chr04:31921722..31921746 (25 bp)
GAAACACCGTGTTTGGGCTGGGCTT
LOC_Os04g53930
Os.8593.1.S1_at--573--8651Chr04:31921740..31921764 (25 bp)
TGGGCTTTTGTGACTACGCTCATGA
LOC_Os04g53930
Os.8593.1.S1_at--687--1491Chr04:31921812..31921836 (25 bp)
AGCAAATTTCTTTCGGAATCCTGAC
LOC_Os04g53930
Os.8593.1.S1_at--548--8211Chr04:31921826..31921850 (25 bp)
GGAATCCTGACTACACTTGCTGTGT
LOC_Os04g53930
Os.8593.1.S1_at--279--8811Chr04:31921848..31921872 (25 bp)
TGTTGCTCTGTTCCCGTCTTAATTT
LOC_Os04g53930
Target Sequence 
AGAACAAGCCCATGTACGACACCATGGCCGGCCTGGAGGAAGGGGAGAAGACCCTCCTAAAATGATCATGGAAAACATGC
ATGTGATGCGAGTGATTCTGCTCGGAATCGGCGGGAATTGGTGGATTCTTCTACGTGTTGGTCGCTCGTGCAACCGGAGA
CAAATTGATTTTGGGCCGTTTTCCGCTGGAAACACCGTGTTTGGGCTGGGCTTTTGTGACTACGCTCATGAGTCGCCCTG
GCTACTACCACAGCAAGTNTACTAAGCAGTACAGNTACAGCAAATTTCTTTCGGAATCCTGACTACACTTGCTGTGTTGC
TCTGTTCCCGTCTTAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8593.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis