Browse Element(s) Details


Os.25009.1.A1_at

Description gb:AK111707.1
DB_XREF= gi:37988370
TID=Os.25009.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25009 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023012L17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023012L17, full insert sequence.
FL= gb:AK111707.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1778011/11WD domain containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17730Os.52359.1.S1_at11/113+9842895..9847697prephenate dehydratase family protein, expressed
LOC_Os03g17740Os.10761.1.S1_at11/113+9851299..9855629plastidic phosphate translocator-like protein2, putative, expressed
LOC_Os03g17750OsAffx.12901.1.S1_at11/113+9856054..9856442hypothetical protein
LOC_Os03g17760Os.14770.1.S1_at11/113+9857077..9859981RNA recognition motif family protein, expressed
LOC_Os03g17770OsAffx.30237.2.S1_x_at11/113+9869463..9870476hypothetical protein
LOC_Os03g17780Os.25009.1.A1_at11/113+9872475..9875649WD domain containing protein, putative, expressed
LOC_Os03g17790Os.15938.1.S1_at5/113+9879055..9879343hypothetical protein
LOC_Os03g17800Os.53801.1.S1_at11/113+9883680..9886059Phosphatidylinositol transfer protein, expressed
LOC_Os03g17810Os.53414.1.S1_at11/113+9895146..9896337LOB domain protein 1, putative, expressed
LOC_Os03g17820OsAffx.12902.1.S1_at10/113+9900096..9901885hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25009.1.A1_at--132--3071Chr03:9875064..9875088 (25 bp)
AATAGCTTCCAACAAGCGGGCGAGA
LOC_Os03g17780
Os.25009.1.A1_at--1115--5591Chr03:9875089..9875113 (25 bp)
GAAATTGATGCATCTCGACCGGAGC
LOC_Os03g17780
Os.25009.1.A1_at--689--551Chr03:9875124..9875148 (25 bp)
ATCCGACCTCATCATGCATGTTTTG
LOC_Os03g17780
Os.25009.1.A1_at--935--5911Chr03:9875182..9875206 (25 bp)
GAGCATGAACCAGCTACTGCAGATT
LOC_Os03g17780
Os.25009.1.A1_at--613--711Chr03:9875216..9875240 (25 bp)
ATGATGATGAGTCTTTCTTCGCTGG
LOC_Os03g17780
Os.25009.1.A1_at--961--9571Chr03:9875231..9875255 (25 bp)
TCTTCGCTGGGTTTGATGATGCCAA
LOC_Os03g17780
Os.25009.1.A1_at--720--8991Chr03:9875312..9875336 (25 bp)
TGAAGATTTACAGCCTGCCCCTTAT
LOC_Os03g17780
Os.25009.1.A1_at--113--10191Chr03:9875334..9875358 (25 bp)
TATACTTTTAGCCTGCAGCCTGATG
LOC_Os03g17780
Os.25009.1.A1_at--702--7411Chr03:9875507..9875531 (25 bp)
GTGTTACTGGGTGTTTTCATCTCAT
LOC_Os03g17780
Os.25009.1.A1_at--442--10331Chr03:9875521..9875545 (25 bp)
TTTCATCTCATGTACTTAGTCTAGT
LOC_Os03g17780
Os.25009.1.A1_at--704--191Chr03:9875618..9875642 (25 bp)
ATTTCTATGGCGATGCTAAGCGTGC
LOC_Os03g17780
Target Sequence 
AATAGCTTCCAACAAGCGGGCGAGAGAAATTGATGCATCTCGACCGGAGCTGACGCTTTCATCCGACCTCATCATGCATG
TTTTGAGGTTGCAGAGGAGACAGTNTGAATTGTACAGGGAGCATGAACCAGCTACTGCAGATTTGGCAAGTGATGATGAT
GAGTCTTTCTTCGCTGGGTTTGATGATGCCAATAGGAATGTAAGATCTAACTCTGATCCAAGGGAATGCATTGTGACATG
AAAGGAACTGAAGATTTACAGCCTGCCCCTTATACTTTTAGCCTGCAGCCTGATGCCCTGATATACCATGCTATGCTGCA
TATGCAGGGCTTAGCAAACGATGCAACNNGAGGAACACAGATACTCNTGATACGTGCCGGCAAGATTAAACGGTTAGGAC
TTNANAGTGTGACGACCTACCTTGATAGTNTTGTAAACCAGGAGTGTTACTGGGTGTTTTCATCTCATGTACTTAGTCTA
GTATTAGTAAAAAATAATCNCTTTGCTGGCAAGGAAATGCNCATGTAATTATGGAGTACTCCGTATATTTGAGAATTTCT
ATGGCGATGCTAAGCGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25009.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis