Browse Element(s) Details


Os.25046.1.S1_at

Description gb:AK067035.1
DB_XREF= gi:32977053
TID=Os.25046.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25046 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013089G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013089G04, full insert sequence.
FL= gb:AK067035.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5269010/11AAA-type ATPase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52660Os.27304.1.A1_at11/114+31121219..31125663expressed protein
LOC_Os04g52670OsAffx.14380.1.S1_s_at11/114+31130595..31131661Auxin responsive protein, expressed
LOC_Os04g52680OsAffx.26577.1.S1_at4/114+31135177..31136141hypothetical protein
LOC_Os04g52690Os.25046.1.S1_at10/114+31145050..31150338AAA-type ATPase family protein, putative, expressed
LOC_Os04g52700OsAffx.14381.1.S1_x_at11/114+31160287..31161664expressed protein
LOC_Os04g52710Os.11743.1.S1_at11/114+31170607..31174272Imidazoleglycerol-phosphate dehydratase, putative, expressed
LOC_Os04g52720OsAffx.4158.1.S1_s_at11/114+31174540..31176126Germin-like protein subfamily 1 member 8 precursor, putative, expressed
LOC_Os04g52720OsAffx.4158.1.S1_at11/114+31174540..31176126Germin-like protein subfamily 1 member 8 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016558biological_processprotein import into peroxisome matrix
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25046.1.S1_at--753--2651Chr04:31145768..31145792 (25 bp)
AAGCCAGTGCTGATGACGTCATTGT
LOC_Os04g52690
Os.25046.1.S1_at--554--7671Chr04:31145640..31145664 (25 bp)
GGGATATCACACCATCGTTGTCTAT
LOC_Os04g52690
Os.25046.1.S1_at--180--7551Chr04:31145403..31145427 (25 bp)
GTGGCCATGACGAAAGCATTGGCTA
LOC_Os04g52690
Os.25046.1.S1_at--335--9471Chr04:31145287..31145311 (25 bp)
TCTGCAAAGGCATTATCATCTAGAA
LOC_Os04g52690
Os.25046.1.S1_at--27--2251Chr04:31145212..31145236 (25 bp)
AAATTGCAAACGCTGCATAGCATTC
LOC_Os04g52690
Os.25046.1.S1_at--1088--9631Chr04:31145124..31145148 (25 bp)
TCAGAGGACAATACTGCTACGTTTT
LOC_Os04g52690
Os.25046.1.S1_at--1141--9911Chr04:31145113..31145137 (25 bp)
TACTGCTACGTTTTGTTGGCAACCT
LOC_Os04g52690
Os.25046.1.S1_at--353--10371Chr04:31145101..31145125 (25 bp)
TTGTTGGCAACCTTTTCCTTTGTCA
LOC_Os04g52690
Os.25046.1.S1_at--304--9711Chr04:31145079..31145103 (25 bp)
TCAACTAGATAGTCTGCACCTTCAG
LOC_Os04g52690
Os.25046.1.S1_at--537--5071Chr04:31145064..31145088 (25 bp)
GCACCTTCAGCAAACTAATCCTAGC
LOC_Os04g52690
Os.25046.1.S1_at--647--3731Chr04:31145050..31145074 (25 bp)
CTAATCCTAGCATACTTTTCTTTCT
NONE
Target Sequence 
AAGCCAGTGCTGATGACGTCATTGTTGAGATAAATGATTTCATGACAGTGTTAGGGGATATCACACCATCGTTGTCTATA
GAAGAATTACAAAACTATGAACAGTTGAGGAAGAAGATTGAGGGACCATCTAGATGACGTCAGTTAAGCCTTCATTCTGT
GCTACCATAGCAACCTAAGTTTCAGTGTATTTGACACATGGTGGCCATGACGAAAGCATTGGCTAGTGATGAATGTGGCA
CCATTTTTCTTTCCACCATGCCAGATCTTCCGGGCTCCAGTTATATTTTGACTTCAACACGAGCTAACTGACCTTATCTG
CAAAGGCATTATCATCTAGAATCTAGACAGTTTCTGGTTCTGCTTTAGTTAGGGTTCAACGAATTGACTCAAAATTGCAA
ACGCTGCATAGCATTCATATATAGAAAGTGAGTATACTCATGTATCATCTCAACTATGTATCCTCCTGTCCTCTATCCTT
CAGAGGACAATACTGCTACGTTTTGTTGGCAACCTTTTCCTTTGTCAACTAGATAGTCTGCACCTTCAGCAAACTAATCC
TAGCATACTTTTCTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25046.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis