Browse Element(s) Details


Os.25070.1.A1_at

Description gb:CA763481
DB_XREF= gi:25807520
DB_XREF=BR060007B10E04.ab1
CLONE=BR060007B10E04.ab1
TID=Os.25070.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.25070 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative NAM-like protein (OSJNBa0045B21.14), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2737011/11transposon protein, putative, Pong sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g27320OsAffx.8130.1.S1_at11/1110+14089882..14090787hypothetical protein
LOC_Os10g27330OsAffx.30560.1.S1_x_at11/1110+14092789..14096759Acyltransferase family protein, expressed
LOC_Os10g27330OsAffx.3584.1.S1_x_at4/1110+14092789..14096759Acyltransferase family protein, expressed
LOC_Os10g27330OsAffx.30743.1.S1_x_at1/1110+14092789..14096759Acyltransferase family protein, expressed
LOC_Os10g27340Os.18412.1.S1_a_at11/1110+14096801..14100948prolyl 4-hydroxylase, putative, expressed
LOC_Os10g27340Os.18412.1.S1_at11/1110+14096801..14100948prolyl 4-hydroxylase, putative, expressed
LOC_Os10g27340Os.18412.2.S1_x_at10/1110+14096801..14100948prolyl 4-hydroxylase, putative, expressed
LOC_Os10g27350OsAffx.20351.1.S1_x_at11/1110+14103018..14103776hypothetical protein
LOC_Os10g27360Os.46817.1.S1_at10/1110+14105439..14107400No apical meristem protein, expressed
LOC_Os10g27370Os.25070.1.A1_at11/1110+14109835..14111457transposon protein, putative, Pong sub-class, expressed
LOC_Os10g27380Os.46798.2.S1_x_at11/1110+14112352..14114069expressed protein
LOC_Os10g27380Os.46798.1.S1_at11/1110+14112352..14114069expressed protein
LOC_Os10g27390OsAffx.18422.1.S1_at11/1110+14115274..14117178No apical meristem protein
LOC_Os10g27400OsAffx.20350.1.S1_x_at11/1110+14118285..14118815hypothetical protein
LOC_Os10g27420OsAffx.30562.1.S1_at11/1110+14131199..14132010hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25070.1.A1_at--636--8312Chr10:14110410..14110434 (25 bp)
GGCTCATGTCGATCCTTTAGTGAGA
LOC_Os10g27370
Os.25070.1.A1_at--584--4311Chr10:14110397..14110421 (25 bp)
CCTTTAGTGAGACCATCTGCAAGCA
LOC_Os10g27370
Os.25070.1.A1_at--1012--472Chr06:24229714..24229733 (20 bp)
ATCTGCAAGCACAAACTCTAGTGAA
NONE
Os.25070.1.A1_at--1053--1111Chr10:14110364..14110388 (25 bp)
AGTGAATTTCATTACAGCCCCGACA
LOC_Os10g27370
Os.25070.1.A1_at--512--1671Chr10:14110349..14110373 (25 bp)
AGCCCCGACATTAATACCTCTGATC
LOC_Os10g27370
Os.25070.1.A1_at--901--1751Chr10:14110334..14110358 (25 bp)
ACCTCTGATCCTTTAGTGAGACCAC
LOC_Os10g27370
Os.25070.1.A1_at--585--4311Chr10:14110325..14110349 (25 bp)
CCTTTAGTGAGACCACCTGGGAAGA
LOC_Os10g27370
Os.25070.1.A1_at--427--9891Chr10:14109950..14109974 (25 bp)
TACTATTTTCTAATGGGTTGTGAAC
LOC_Os10g27370
Os.25070.1.A1_at--754--9172Chr10:14109913..14109937 (25 bp)
TGCCGTGTAGGCTTTGATGTATTAT
LOC_Os10g27370
Os.25070.1.A1_at--784--6611Chr10:14109876..14109900 (25 bp)
GTTGGAACTTAATGTTTTGTGACCT
LOC_Os10g27370
Os.25070.1.A1_at--194--8791Chr10:14109864..14109888 (25 bp)
TGTTTTGTGACCTTTATGCTGTACT
LOC_Os10g27370
Target Sequence 
GGCTCATGTCGATCCTTTAGTGAGACCATCTGCAAGCACAAACTCTAGTGAATTTCATTACAGCCCCGACATTAATACCT
CTGATCCTTTAGTGAGACCACCTGGGAAGAAGGTGGAAAAGGCAAAATGCCCGCGAGGTAATACTTNTTCATGCTCAAGT
GAGAGTAGTCCNGTAGTTATTGCATTAAATAACATGTGGTCAGAGAAAAAGGAGATGAGTGCNCAATCTAGGGAGGAAAG
AAATGACCGGTTGGTTGAAGTTATTTCNCTAGAGAAAGAGAGGTTGAAAGTAGAAAAACGAAAGTTAGATATAGAAACCC
NTGAAAGAGAAGAAAGAATTATGAATATGGATCTTAGTGCTATGGATGGGCCAAGAAAAACATATTACTTNCGTTTGCAG
CAGGAGATCATAAAGGCTCATATGGATTGATTTCATGATGTATGGATATGTACTATTTATTACTATTTTCTAATGGGTTG
TGAACTTTTATGTTGTATGCCGTGTAGGCTTTGATGTATTATGTAATGGTTATTGTTGGAACTTAATGTTTTGTGACCTT
TATGCTGTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25070.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis