Browse Element(s) Details


Os.25071.1.A1_at

Description gb:AK067818.1
DB_XREF= gi:32977836
TID=Os.25071.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25071 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013116H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013116H12, full insert sequence.
FL= gb:AK067818.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g198909/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g19870NANA2+11674414..11684362retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g19880OsAffx.12123.1.S1_at11/112+11693449..11699182Cell differentiation protein rcd1, putative, expressed
LOC_Os02g19890Os.54012.1.S1_x_at11/112+11701991..11708366NB-ARC domain containing protein, expressed
LOC_Os02g19890Os.25071.1.A1_at9/112+11701991..11708366NB-ARC domain containing protein, expressed
LOC_Os02g19900NANA2+11709902..11710459hypothetical protein
LOC_Os02g19924OsAffx.24336.1.S1_at11/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924OsAffx.24336.1.S1_x_at11/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924OsAffx.12124.1.S1_at10/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924OsAffx.12125.1.S1_x_at6/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924Os.52238.1.S1_at3/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924OsAffx.12125.3.S1_x_at2/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924Os.49936.2.A1_at2/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924OsAffx.15708.1.S1_at1/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25071.1.A1_at--878--8171Chr02:11702407..11702431 (25 bp)
GGAACTGTGGGTCCATTCAATGTGT
LOC_Os02g19890
Os.25071.1.A1_at--373--3111Chr02:11702348..11702372 (25 bp)
CAATGTACGTAGCTATGGGCCTTTT
LOC_Os02g19890
Os.25071.1.A1_at--687--10131Chr02:11702273..11702297 (25 bp)
TATCGTGGGATTCTTTGGGCGTTCA
LOC_Os02g19890
Os.25071.1.A1_at--244--8371Chr02:11702256..11702280 (25 bp)
GGCGTTCAGGAACATATCTTGATGC
LOC_Os02g19890
Os.25071.1.A1_at--151--3691Chr02:11702211..11702235 (25 bp)
CTATGTAGATCTCAGCAAAGCGCGA
LOC_Os02g19890
Os.25071.1.A1_at--823--4551Chr02:11702192..11702216 (25 bp)
GCGCGAAATCCTTTAACCAAACTTG
LOC_Os02g19890
Os.25071.1.A1_at--611--2071Chr02:11702123..11702147 (25 bp)
ACATTTCCTGATATTATGGTCGGAC
LOC_Os02g19890
Os.25071.1.A1_at--824--10091Chr02:11702109..11702133 (25 bp)
TATGGTCGGACTACTCGTATTTCAA
LOC_Os02g19890
Os.25071.1.A1_at--994--9731Chr02:11702088..11702112 (25 bp)
TCAATTCTTGTGATCTGTTTTCCTT
LOC_Os02g19890
Os.25071.1.A1_at--543--4892Chr02:11701913..11701937 (25 bp)
GCTTCATATGTAGTGCGCTGCAGTA
NONE
Os.25071.1.A1_at--641--4572Chr02:11701798..11701822 (25 bp)
GCGCTGCAGTAAAATGATCACGTCA
NONE
Target Sequence 
GGAACTGTGGGTCCATTCAATGTGTTATNTGAGGCTATAACATCNCTTACACTTGTGACCAATGTACGTAGCTATGGGCC
TTTTGGACAACCNCAGGGTACTCCTTTCCGTACTCCACGGAAGAAAAACAGTTGTATCGTGGGATTCTTTGGGCGTTCAG
GAACATATCTTGATGCAGTTGGGGTCTATTTTCNCCCTATGTAGATCTCAGCAAAGCGCGAAATCCTTTAACCAAACTTG
TAGTTTATATTCNCATTGTGTCGAATATTTTCTTTTGTTTCTTTACATTTCCTGATATTATGGTCGGACTACTCGTATTT
CAATTCTTGTGATCTGTTTTCCTTTCACCTGNTTTTTTTTTNTCAGTTGTTCAAATAACATCAAAAGTTGTTTTAGCTTC
ATATGTAGTGCGCTGCAGTAAAATGATCACGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25071.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis