Browse Element(s) Details


Os.25139.1.A1_at

Description gb:NM_194672.1
DB_XREF= gi:37530703
TID=Os.25139.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.25139 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative non-LTR retroelement reverse transcriptase (OSJNBa0056A20.1), mRNA.
PROD=putative non-LTR retroelement reversetranscriptase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g034908/11Protein kinase domain containing protein
LOC_Os08g407505/11hypothetical protein
LOC_Os10g073705/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03450NANA10+1463842..1464354hypothetical protein
LOC_Os10g03460Os.47463.1.S1_x_at5/1110+1466780..1470477transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03460Os.14491.2.S1_x_at4/1110+1466780..1470477transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03470NANA10+1473047..1476379transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03480OsAffx.30257.1.S1_x_at11/1110+1482400..1483317Protein kinase domain containing protein
LOC_Os10g03480OsAffx.30257.1.S1_at11/1110+1482400..1483317Protein kinase domain containing protein
LOC_Os10g03480OsAffx.30252.1.S1_x_at1/1110+1482400..1483317Protein kinase domain containing protein
LOC_Os10g03490OsAffx.30257.2.S1_at11/1110+1485427..1488816Protein kinase domain containing protein
LOC_Os10g03490Os.25139.1.A1_at8/1110+1485427..1488816Protein kinase domain containing protein
LOC_Os10g03500OsAffx.6567.2.S1_at11/1110+1498961..1499455hypothetical protein
LOC_Os10g03500OsAffx.6567.1.S1_x_at11/1110+1498961..1499455hypothetical protein
LOC_Os10g03510OsAffx.18106.1.S1_at11/1110+1500565..1500954hypothetical protein
LOC_Os10g03520OsAffx.18107.1.S1_at11/1110+1507807..1508585expressed protein
LOC_Os10g03530OsAffx.20776.1.S1_at11/1110+1509660..1510442CAF1 family ribonuclease containing protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25139.1.A1_at--306--2012Chr10:1490037..1490061 (25 bp)
ACTAAGTTCTTCCATGCTAAGGCAA
NONE
Os.25139.1.A1_at--246--6171NONE
GAGGACGACAAAAGCTTTGACTTTG
NONE
Os.25139.1.A1_at--756--2951Chr10:1488780..1489149 (25 bp)
AATGGTCTGGTTGAAGGTAAGCTGC
NONE
Os.25139.1.A1_at--1043--7813Chr10:3867493..3867517 (25 bp)
GGTAAGCTGCAATCTATTGGAGGAA
LOC_Os10g07370
Os.25139.1.A1_at--816--8191Chr10:1488744..1488768 (25 bp)
GGAAGGCTAGTGCTGCTTAATTCAA
LOC_Os10g03490
Os.25139.1.A1_at--1076--3131Chr10:1488726..1488750 (25 bp)
AATTCAAGTTTAAGCAGTGTTCCTA
LOC_Os10g03490
Os.25139.1.A1_at--706--1112Chr10:3867547..3867571 (25 bp)
AGTGTTCCTATGTACATGCTCTCTT
LOC_Os10g07370
Os.25139.1.A1_at--917--8733Chr10:3867557..3867581 (25 bp)
TGTACATGCTCTCTTTTTATGAACT
LOC_Os10g07370
Os.25139.1.A1_at--544--6492Chr10:1488660..1488684 (25 bp)
GATAGGATGGATTACTTCAGGAAAA
LOC_Os10g03490
Os.25139.1.A1_at--50--6973Chr10:3867657..3867681 (25 bp)
GTACCATCTAGTTAATTGGCCCCTA
LOC_Os10g07370
Os.25139.1.A1_at--759--8392Chr10:3867674..3867799 (25 bp)
GGCCCCTAGTTTGTTCACCAAGAGA
LOC_Os10g07370
Target Sequence 
ACTAAGTTCTTCCATGCTAAGGCAAATGGGAGGAAGAGGACGACAAAAGCTTTGACTTTGTTACTTCAAAGAGCTGAGGA
GAATGGTCTGGTTGAAGGTAAGCTGCAATCTATTGGAGGAAGGCTAGTGCTGCTTAATTCAAGTTTAAGCAGTGTTCCTA
TGTACATGCTCTCTTTTTATGAACTGCCAAAAGGGGTGAAAGATAGGATGGATTACTTCAGGAAAAGATTTCTATGGCAA
GAAGATCAAAGTATTAGAAAGTACCATCTAGTTAATTGGCCCCTAGTTTGTTCACCAAGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25139.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis