Browse Element(s) Details


Os.25157.1.A1_at

Description gb:AK064652.1
DB_XREF= gi:32974670
TID=Os.25157.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.25157 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-114-E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-114-E10, full insert sequence.
FL= gb:AK064652.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0845011/11expressed protein
LOC_Os05g084601/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g08410Os.49237.1.S1_at11/115+4563218..4566986ATP10 protein, expressed
LOC_Os05g08410OsAffx.14231.1.S1_at1/115+4563218..4566986ATP10 protein, expressed
LOC_Os05g08420Os.53275.1.S1_at11/115+4571250..4572060expressed protein
LOC_Os05g08430OsAffx.14301.1.S1_at7/115+4578998..4586348Boron transporter-like protein 2, putative, expressed
LOC_Os05g08440Os.23289.1.S1_at11/115+4588889..4590693F-box domain containing protein, expressed
LOC_Os05g08450Os.25157.1.A1_at11/115+4591644..4593202expressed protein
LOC_Os05g08460Os.25157.1.A1_at1/115+4598868..4601064F-box domain containing protein
LOC_Os05g08470NANA5+4603276..4603910hypothetical protein
LOC_Os05g08480Os.5649.1.S1_at11/115+4604454..4606307Cytokinin-O-glucosyltransferase 1, putative, expressed
LOC_Os05g08490NANA5+4613459..4614384Cytokinin-O-glucosyltransferase 1, putative
LOC_Os05g08500Os.35344.18.S1_x_at9/115+4615152..4621207transposon protein, putative, Mutator sub-class
LOC_Os05g08500Os.35344.3.S1_x_at8/115+4615152..4621207transposon protein, putative, Mutator sub-class
LOC_Os05g08500OsAffx.22940.5.S1_x_at3/115+4615152..4621207transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25157.1.A1_at--475--4951Chr05:4592831..4592855 (25 bp)
GCATTTTATATGTGGCATCGGAGGT
LOC_Os05g08450
Os.25157.1.A1_at--266--7311Chr05:4592865..4592889 (25 bp)
GTGATGTACTATCTTCCTTACGTTC
LOC_Os05g08450
Os.25157.1.A1_at--595--9791Chr05:4592882..4592906 (25 bp)
TTACGTTCCCTTGTACTTAGAATCA
LOC_Os05g08450
Os.25157.1.A1_at--71--9691Chr05:4592904..4592928 (25 bp)
TCACTGGCAGATGGGCATTGATCAT
LOC_Os05g08450
Os.25157.1.A1_at--244--3612Chr05:4592919..4592943 (25 bp)
CATTGATCATCGTACTTGCATAGGC
LOC_Os05g08450
Os.25157.1.A1_at--930--10731Chr05:4592934..4592958 (25 bp)
TTGCATAGGCGAACGCTTGGTTTGT
LOC_Os05g08450
Os.25157.1.A1_at--170--5691Chr05:4592973..4592997 (25 bp)
GACATTGGAGTTAGGACACCGATAA
LOC_Os05g08450
Os.25157.1.A1_at--371--3411Chr05:4593001..4593025 (25 bp)
CAGCAGGAACTTGGCAGATCTTTCT
LOC_Os05g08450
Os.25157.1.A1_at--385--10771Chr05:4593053..4593077 (25 bp)
TTGAGTGCGTTCTGCAACCTCACTT
LOC_Os05g08450
Os.25157.1.A1_at--914--10271Chr05:4593147..4593171 (25 bp)
TTTGCGATGTTGAAAACCCTCTAGC
LOC_Os05g08450
Os.25157.1.A1_at--435--5511Chr05:4593158..4593182 (25 bp)
GAAAACCCTCTAGCACTTATTTATG
LOC_Os05g08450
Target Sequence 
GCATTTTATATGTGGCATCGGAGGTTGTGAGTGGGTGATGTACTATCTTCCTTACGTTCCCTTGTACTTAGAATCACTGG
CAGATGGGCATTGATCATCGTACTTGCATAGGCGAACGCTTGGTTTGTTAACCTTAAATTATGACATTGGAGTTAGGACA
CCGATAAGATCAGCAGGAACTTGGCAGATCTTTCTGATGTTGTGCTACATTGTTGTAGGTGGTTGAGTGCGTTCTGCAAC
CTCACTTTCTGGGGCCAACTTTTCAGTAACTTGGAACTTAATTCGGATTTTGTAATAGTGATGTTGTATTTGATTGTTTG
CGATGTTGAAAACCCTCTAGCACTTATTTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25157.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis