Browse Element(s) Details


Os.25233.1.S1_x_at

Description gb:NM_192517.1
DB_XREF= gi:34912117
GEN=OSJNBb0024F06.10
TID=Os.25233.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.25233 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative myosin-like protein my5 (OSJNBb0024F06.10), mRNA.
PROD=putative myosin-like protein my5
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4020011/11DIL domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40170OsAffx.11400.2.S1_at11/111+22983216..22991418translation initiation factor, putative
LOC_Os01g40170OsAffx.11400.1.S1_x_at11/111+22983216..22991418translation initiation factor, putative
LOC_Os01g40170OsAffx.11400.1.S1_at11/111+22983216..22991418translation initiation factor, putative
LOC_Os01g40170OsAffx.11400.1.S1_s_at10/111+22983216..22991418translation initiation factor, putative
LOC_Os01g40170OsAffx.1516.1.S1_at1/111+22983216..22991418translation initiation factor, putative
LOC_Os01g40180NANA1+22992964..22993860hypothetical protein
LOC_Os01g40190OsAffx.21421.1.S1_x_at11/111+23002978..23005466transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g40190Os.56014.1.S1_at11/111+23002978..23005466transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g40200Os.25233.1.S1_at11/111+23010748..23014542DIL domain containing protein, expressed
LOC_Os01g40200Os.25233.1.S1_x_at11/111+23010748..23014542DIL domain containing protein, expressed
LOC_Os01g40200OsAffx.23597.1.S1_x_at7/111+23010748..23014542DIL domain containing protein, expressed
LOC_Os01g40210OsAffx.23598.1.S1_x_at2/111+23019913..23020560hypothetical protein
LOC_Os01g40220OsAffx.23599.1.S1_at3/111+23022128..23022513hypothetical protein
LOC_Os01g40230Os.35344.18.S1_x_at10/111+23025268..23031904transposon protein, putative, Mutator sub-class
LOC_Os01g40230Os.35344.3.S1_x_at9/111+23025268..23031904transposon protein, putative, Mutator sub-class
LOC_Os01g40230OsAffx.22940.5.S1_at7/111+23025268..23031904transposon protein, putative, Mutator sub-class
LOC_Os01g40230OsAffx.22940.5.S1_x_at5/111+23025268..23031904transposon protein, putative, Mutator sub-class
LOC_Os01g40240NANA1+23032731..23034317F-box domain containing protein
LOC_Os01g40250OsAffx.23600.2.S1_at11/111+23036434..23054930HEAT repeat family protein, expressed
LOC_Os01g40250OsAffx.23600.1.S1_at10/111+23036434..23054930HEAT repeat family protein, expressed
LOC_Os01g40250OsAffx.23600.1.S1_x_at9/111+23036434..23054930HEAT repeat family protein, expressed
LOC_Os01g40250OsAffx.7512.1.A1_at1/111+23036434..23054930HEAT repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030048biological_processactin filament-based movement
GO:0005777cellular_componentperoxisome
GO:0016459cellular_componentmyosin
GO:0003774molecular_functionmotor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25233.1.S1_x_at--187--5171Chr01:23011887..23011911 (25 bp)
GCAAGCTTCTATGGCACATTGGCAG
LOC_Os01g40200
Os.25233.1.S1_x_at--482--5391Chr01:23011322..23011346 (25 bp)
GAAGCACAGCAAGTCTCTCAAAGAA
LOC_Os01g40200
Os.25233.1.S1_x_at--754--691Chr01:23011199..23011314 (25 bp)
ATGAGTACTGCCCAGCACTTAGCAT
LOC_Os01g40200
Os.25233.1.S1_x_at--322--6931Chr01:23011132..23011156 (25 bp)
GTATGGAACTCTGGGTATTCCTCCA
LOC_Os01g40200
Os.25233.1.S1_x_at--607--7411Chr01:23011100..23011124 (25 bp)
GTGATTCCAATACATTCCTGACAAG
LOC_Os01g40200
Os.25233.1.S1_x_at--115--3651Chr01:23011054..23011078 (25 bp)
CTTCACCTCGTGGACTAAACAATCT
LOC_Os01g40200
Os.25233.1.S1_x_at--233--3731Chr01:23011040..23011064 (25 bp)
CTAAACAATCTAAACTGCAGGTGGT
LOC_Os01g40200
Os.25233.1.S1_x_at--617--7271Chr01:23010993..23011017 (25 bp)
GTCCAGCAGGGATCGAACAGTCCAT
LOC_Os01g40200
Os.25233.1.S1_x_at--65--3171Chr01:23010951..23010975 (25 bp)
AATTCCTTCCTGTTAGATGACGATT
LOC_Os01g40200
Os.25233.1.S1_x_at--372--6531Chr01:23010846..23010877 (25 bp)
GATTTCAGTATACCGTTCTCCATCG
LOC_Os01g40200
Os.25233.1.S1_x_at--577--6251Chr01:23010805..23010829 (25 bp)
GATGGTTCACATCGACATAGCAGAT
LOC_Os01g40200
Target Sequence 
GCAAGCTTCTATGGCACATTGGCAGAGCATCATCAAAATTCTTACAAATTCGCTGAATGTCCTAAAATCCAATTATNNNN
CNNNNTNNNNNNNNNNCNANCTGNNNNNNNNNNNNNNNNCNNTNNNNNNTCTGATACTTGAAGAGAAGCACAGCAAGTCT
CTCAAAGAAATCACTGATGAGTACTGCCCAGCACTTAGCATGCAGCAGCTATACAGAATCAGCACAATGTATTGCGACGA
CAAGTATGGAACTCTGGGTATTCCTCCAGAAGTATGTGATTCCAATACATTCCTGACAAGAACTTTTACAAGATTCATCT
TCTTCACCTCGTGGACTAAACAATCTAAACTGCAGGTGGTTTCGAGCATGAGAACCAAGATGGTCCAGCAGGGATCGAAC
AGTCCATCGACACAAGATGACATCAATTCCTTCCTGTTAGATGACGATTTCAGTATACCGTTCTCCATCGATGACATTGC
AAAGCTGATGGTTCACATCGACATAGCAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25233.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis