Browse Element(s) Details


Os.25244.1.S1_at

Description gb:AK070085.1
DB_XREF= gi:32980109
TID=Os.25244.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.25244 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023043K08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023043K08, full insert sequence.
FL= gb:AK070085.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g301609/11trehalose-6-phosphate phosphatase, putative, expressed
LOC_Os06g499301/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g30150OsAffx.28670.2.S1_at11/117+17786140..17799533Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os07g30150OsAffx.28670.1.S1_s_at11/117+17786140..17799533Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os07g30150Os.16899.1.S1_at11/117+17786140..17799533Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os07g30150OsAffx.28669.1.S1_at10/117+17786140..17799533Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os07g30150OsAffx.28910.1.S1_at1/117+17786140..17799533Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os07g30154Os.51032.1.S1_at11/117+17803718..17804277expressed protein
LOC_Os07g30154Os.8638.1.S1_s_at2/117+17803718..17804277expressed protein
LOC_Os07g30160Os.25244.1.S1_at9/117+17814498..17819065trehalose-6-phosphate phosphatase, putative, expressed
LOC_Os07g30170Os.8024.1.S1_at11/117+17818872..17822043Beta-ureidopropionase, putative, expressed
LOC_Os07g30180OsAffx.32258.1.A1_at3/117+17823790..17827524transposon protein, putative, Mutator sub-class
LOC_Os07g30190NANA7+17830368..17836580retrotransposon protein, putative, unclassified
LOC_Os07g30200Os.27164.1.A1_a_at11/117+17836836..17843293Asparaginyl-tRNA synthetase, putative, expressed
LOC_Os07g30200Os.27164.2.S1_at7/117+17836836..17843293Asparaginyl-tRNA synthetase, putative, expressed
LOC_Os07g30200Os.39963.1.S1_at1/117+17836836..17843293Asparaginyl-tRNA synthetase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005992biological_processtrehalose biosynthesis
GO:0004805molecular_functiontrehalose-phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25244.1.S1_at--291--8551Chr07:17818117..17818141 (25 bp)
TGGAGTTCTTGCTGGACTCCCTAGA
LOC_Os07g30160
Os.25244.1.S1_at--1068--10691Chr07:17818125..17818149 (25 bp)
TTGCTGGACTCCCTAGATCTAGCTA
LOC_Os07g30160
Os.25244.1.S1_at--725--2271Chr07:17818157..17818181 (25 bp)
AAATGTTCTCCCTATTTACATCGGG
LOC_Os07g30160
Os.25244.1.S1_at--1025--10611Chr07:17818402..17818426 (25 bp)
TTCGGGATTCTGGTGTCATCTGTAC
LOC_Os07g30160
Os.25244.1.S1_at--696--9471Chr07:17818648..17818672 (25 bp)
TCTGATGTTTACTCTAGGGTAGATT
LOC_Os07g30160
Os.25244.1.S1_at--948--7591Chr07:17818703..17818727 (25 bp)
GGGCAACAGAATTAACTTGGACATA
LOC_Os07g30160
Os.25244.1.S1_at--932--5671Chr07:17818722..17818746 (25 bp)
GACATAGTGGACAGTTGTACATCAT
LOC_Os07g30160
Os.25244.1.S1_at--230--10191Chr07:17818746..17818770 (25 bp)
TATAGTTAATCCATTTTCTTAGCCT
LOC_Os07g30160
Os.25244.1.S1_at--711--71Chr07:17818793..17818817 (25 bp)
ATTGCCATGTTGTACAAGAATGCGA
LOC_Os07g30160
Os.25244.1.S1_at--533--10391NONE
TTTTGGGCTAAACCATTACTATGGC
NONE
Os.25244.1.S1_at--347--10111Chr06:30226802..30226996 (25 bp)
TATGGTTTGGTGTGCATTATCTTTA
LOC_Os06g49930
Target Sequence 
TGGAGTTCTTGCTGGACTCCCTAGATCTAGCTANCTGTAAAAATGTTCTCCCTATTTACATCGGGGANGATNGTACCGAC
GAGGANGCTTTTAAGGTTCTTCGTGACGATAAAAGGGGTTTCGGGATTCTGGTGTCATCTGTACCAAANGATTCTCATGC
CCTNTATTCTCTGATTGATCCATCTGAGGTTATGGAATTCTTGAAAAGACTAGTNATGTGGAAGAANGAAGAAGCNTCNC
ATAATAAGTAGATTATAAATATNTCTGATGTTTACTCTAGGGTAGATTTNTGANTTCTGACAAAGAGAATAAGCAGAAGG
GCAACAGAATTAACTTGGACATAGTGGACAGTTGTACATCATATAGTTAATCCATTTTCTTAGCCTNGCAAGTGGCAAAA
TAAAAGTAATTGCCATGTTGTACAAGAATGCGAAGCATTCTGCANAAGTCCAGTTCTTTGAATAATGGTCNCAGTTGTAG
AATGGTGTAACTTGTTAATGAACTGTGATATAAATTTTTGGGCTAAACCATTACTATGGCATATGGTTTGGTGTGCATTA
TCTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25244.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis