Browse Element(s) Details


Os.25261.1.S1_at

Description gb:AK120553.1
DB_XREF= gi:37990176
TID=Os.25261.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25261 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013130G17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013130G17, full insert sequence.
FL= gb:AK120553.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1054011/11aminopeptidase P, cytosolic, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10520Os.14421.2.S1_x_at11/117+5658074..5666040WD40 associated region in TFIID subunit family protein, expressed
LOC_Os07g10530Os.6633.1.S1_at11/117+5680311..5683565Carboxyl-terminal peptidase, putative, expressed
LOC_Os07g10540Os.25261.1.S1_at11/117+5690180..5698183aminopeptidase P, cytosolic, putative, expressed
LOC_Os07g10550Os.52905.1.S2_at11/117+5701086..5709587cyclin, putative, expressed
LOC_Os07g10550Os.52905.1.S1_at11/117+5701086..5709587cyclin, putative, expressed
LOC_Os07g10560Os.24000.1.S1_at11/117+5722282..5724815hypothetical protein
LOC_Os07g10560OsAffx.28388.1.S1_at11/117+5722282..5724815hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009926biological_processauxin polar transport
GO:0005886cellular_componentplasma membrane
GO:0004177molecular_functionaminopeptidase activity
GO:0009983molecular_functiontyrosine aminopeptidase activity
GO:0010013molecular_functionN-1-naphthylphthalamic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25261.1.S1_at--839--191Chr07:5691420..5691444 (25 bp)
ATTTGTCCTTACTATCACCTTCGGA
LOC_Os07g10540
Os.25261.1.S1_at--71--6851Chr07:5690772..5690796 (25 bp)
GTTTCCCCTTTGTTGAGTGGCCATT
LOC_Os07g10540
Os.25261.1.S1_at--531--111Chr07:5690750..5690774 (25 bp)
ATTCTCTCGACTGGCTCCGGAAGAA
LOC_Os07g10540
Os.25261.1.S1_at--1044--2752Chr04:33302870..33302970 (25 bp)
AAGACCTCTTTAGATCCCTCTATTT
NONE
Os.25261.1.S1_at--878--511Chr07:5690612..5690636 (25 bp)
ATCGCTAACTGCAACATCTGACTAC
LOC_Os07g10540
Os.25261.1.S1_at--170--4751Chr07:5690494..5690518 (25 bp)
GCTGATTTATTTGGCGTTCGCTCAA
LOC_Os07g10540
Os.25261.1.S1_at--973--4631Chr07:5690433..5690457 (25 bp)
GCGTACATATTCTCTTACCATGGGT
LOC_Os07g10540
Os.25261.1.S1_at--692--3491Chr07:5690415..5690439 (25 bp)
CATGGGTTAAATTCGCTAGGCAGCT
LOC_Os07g10540
Os.25261.1.S1_at--1155--7011Chr07:5690355..5690379 (25 bp)
GTAAGGCGTTAAACTGTGCCTCCCT
LOC_Os07g10540
Os.25261.1.S1_at--1154--9191Chr07:5690327..5690351 (25 bp)
TCCACTACTACAATTGCTTCCTTAG
LOC_Os07g10540
Os.25261.1.S1_at--666--4911Chr07:5690312..5690336 (25 bp)
GCTTCCTTAGCTTATAGCCTTGCAT
LOC_Os07g10540
Target Sequence 
ATTTGTCCTTACTATCACCTTCGGAGATCAATTGGATCAATGAATACCATGACGAAGTCTGGGAAAAGGTTTCCCCTTTG
TTGAGTGGCCATTCTCTCGACTGGCTCCGGAAGAACACAAGACCTCTTTAGATCCCTCTATTTTGGTTGTAGGACTCATG
GGAATATATGAGCTCAATACGTGACATGGTGATAACACAGCAACCATTGGAAGTGGTAGTCAATAGATATCGCTAACTGC
AACATCTGACTACTATCTACTNTTCATCGCATTATCNGCAAACAGTGGCAAAGATGGTGCCAAGGACAGATGGCAATCAG
AACTGCTGTNTGCTGCATCAACTGAAGCTGATTTATTTGGCGTTCGCTCAACTTNGCACGATATTCAGTTCAGAGGGGTT
AAACTCTGCGTACATATTCTCTTACCATGGGTTAAATTCGCTAGGCAGCTAAGTTCAATAAATAAATAAATTCGCTAGAC
AGCTCGTAAGGCGTTAAACTGTGCCTCCCTCCATCCACTACTACAATTGCTTCCTTAGCTTATAGCCTTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25261.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis