Browse Element(s) Details


Os.25370.1.S1_at

Description gb:AK119596.1
DB_XREF= gi:37989219
TID=Os.25370.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.25370 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033025C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-117-D11, full insert sequence.
FL= gb:AK119596.1 gb:AK101103.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g492909/11very-long-chain fatty acid condensing enzyme, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49240NANA5+28170244..28171787RADIALIS, putative, expressed
LOC_Os05g49250Os.46323.1.S1_at11/115+28172364..28173484HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g49260Os.21906.1.S1_at6/115+28175168..28178899Sugar transporter family protein, expressed
LOC_Os05g49270Os.8275.1.S1_at11/115+28181618..28186195Sugar transporter family protein, expressed
LOC_Os05g49270Os.55709.1.S1_at11/115+28181618..28186195Sugar transporter family protein, expressed
LOC_Os05g49280NANA5+28188550..28189325GATA zinc finger family protein
LOC_Os05g49290Os.25370.1.S1_at9/115+28194894..28197963very-long-chain fatty acid condensing enzyme, putative, expressed
LOC_Os05g49300Os.5739.1.S1_at10/115+28206568..28210000NifU-like N-terminal domain containing protein, mitochondrial precursor, putative, expressed
LOC_Os05g49310OsAffx.27380.1.S1_at11/115+28213403..28215056Transcription factor MYB21, putative
LOC_Os05g49320OsAffx.4662.1.S1_at11/115+28216068..2821680950S ribosomal protein L12-1, chloroplast precursor, putative, expressed
LOC_Os05g49320Os.7971.1.S1_x_at1/115+28216068..2821680950S ribosomal protein L12-1, chloroplast precursor, putative, expressed
LOC_Os05g49330NANA5+28217863..28218222hypothetical protein
LOC_Os05g49340NANA5+28221357..28221863hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000038biological_processvery-long-chain fatty acid metabolism
GO:0010025biological_processwax biosynthesis
GO:0030497biological_processfatty acid elongation
GO:0042335biological_processcuticle biosynthesis
GO:0008415molecular_functionacyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25370.1.S1_at--244--7411Chr05:28195934..28195958 (25 bp)
GTGATCACACTGGTCTGTACTTCAT
LOC_Os05g49290
Os.25370.1.S1_at--894--491Chr05:28195857..28195881 (25 bp)
ATCGGTAGGCCTTCCTATTGTTGTA
LOC_Os05g49290
Os.25370.1.S1_at--997--3311Chr05:28195820..28195844 (25 bp)
CACTTTGTTGTCTCTTTAGCCATTG
LOC_Os05g49290
Os.25370.1.S1_at--809--10651Chr05:28195794..28195818 (25 bp)
TTCCGATTGTCATTTACTCCACTAG
LOC_Os05g49290
Os.25370.1.S1_at--116--5191Chr05:28195656..28195680 (25 bp)
GCAAGGGCGTTTTGATCCTGCCAAC
LOC_Os05g49290
Os.25370.1.S1_at--39--5471Chr05:28195624..28195648 (25 bp)
GAACGGATCGATGTGCTGTGTATTT
LOC_Os05g49290
Os.25370.1.S1_at--48--8191Chr05:28195586..28195610 (25 bp)
GGAAGTTTCCTTTTGCTTAGCTATT
LOC_Os05g49290
Os.25370.1.S1_at--154--10471Chr05:28195563..28195587 (25 bp)
TTACCACTGGCCCTGATGTATTAAT
LOC_Os05g49290
Os.25370.1.S1_at--74--7391NONE
GTGATCCTGAAGCTCTCGCAAATGC
NONE
Os.25370.1.S1_at--845--4551NONE
GCCCAATCCTTGTATCTGACATCAA
NONE
Os.25370.1.S1_at--177--6351Chr05:28195437..28195461 (25 bp)
GATGCTCCTGGAAGTTGTTTCTTTT
LOC_Os05g49290
Target Sequence 
GTGATCACACTGGTCTGTACTTCATGGATCATCAGGTAAGTTTTACAGAGTAGCAGCAGAGCTTTGCTGACGAGGTCATC
GGTAGGCCTTCCTATTGTTGTATTATGTACACTACACTTTGTTGTCTCTTTAGCCATTGCTTCCGATTGTCATTTACTCC
ACTAGATACTGCCATAGTGGTCCAGAGGAAAGGTCGAATTTTGTTTTCCTTTTCTTTTCTTCTTCTATTTCTTTTNTTTT
TTTCCCTTCTTTTTTGTCACATGGGATTGATGTTAGTGGCAAGGGCGTTTTGATCCTGCCAACCTATGATGAACGGATCG
ATGTGCTGTGTATTTGTCATGTTCAATTGGAAGTTTCCTTTTGCTTAGCTATTACCACTGGCCCTGATGTATTAATGGTT
TTTAGCTGGATGTGATCCTGAAGCTCTCGCAAATGCCGCCCAATCCTTGTATCTGACATCAATGTATACTTCATCAGATA
CTATACAACAACATATCGATGCTCCTGGAAGTTGTTTCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25370.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis