Browse Element(s) Details


Os.2540.1.S1_at

Description gb:AU056179
DB_XREF= gi:4715062
DB_XREF=AU056179
CLONE=S20354_2Z
TID=Os.2540.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.2540 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0051D19.4), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3506011/11Ser/Thr protein phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35010Os.37979.1.S1_a_at11/1110+18340372..18349394chloroplast inner envelope protein, putative, expressed
LOC_Os10g35010Os.37979.2.S1_at11/1110+18340372..18349394chloroplast inner envelope protein, putative, expressed
LOC_Os10g35020Os.2550.1.S1_at10/1110+18353337..18355965glycosyltransferase, putative, expressed
LOC_Os10g35020Os.5398.2.S1_x_at1/1110+18353337..18355965glycosyltransferase, putative, expressed
LOC_Os10g35030Os.7861.2.S1_s_at11/1110+18358228..18363727IAP100, putative, expressed
LOC_Os10g35030Os.51767.1.S1_at2/1110+18358228..18363727IAP100, putative, expressed
LOC_Os10g35040Os.46331.1.S1_s_at11/1110+18367714..18370483Protein kinase domain containing protein, expressed
LOC_Os10g35050Os.2544.1.S1_s_at11/1110+18371554..18372931Aquaporin TIP3.1, putative, expressed
LOC_Os10g35050OsAffx.9909.2.S1_x_at2/1110+18371554..18372931Aquaporin TIP3.1, putative, expressed
LOC_Os10g35060Os.2540.1.S1_at11/1110+18373563..18376629Ser/Thr protein phosphatase family protein, expressed
LOC_Os10g35070Os.17491.1.S1_at5/1110+18378181..18381958Alpha-galactosidase precursor, putative, expressed
LOC_Os10g35080OsAffx.18523.1.S1_at11/1110+18381976..18385830hypothetical protein
LOC_Os10g35090Os.46382.2.S1_x_at11/1110+18388465..18392252Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35090Os.46382.1.S1_at11/1110+18388465..18392252Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35090Os.46382.2.S2_x_at11/1110+18388465..18392252Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35090Os.46382.4.S1_x_at2/1110+18388465..18392252Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35100Os.10498.1.S1_at11/1110+18394352..18395856expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2540.1.S1_at--761--7591Chr10:18374166..18374190 (25 bp)
GGGCATACACATTTCTGTTGGGATT
LOC_Os10g35060
Os.2540.1.S1_at--659--311Chr10:18373960..18373984 (25 bp)
ATACCGCGATGGTTTCAATCCTGAA
LOC_Os10g35060
Os.2540.1.S1_at--211--10131Chr10:18373932..18373956 (25 bp)
TATCCAGCTCTATGGTCTGACTACT
LOC_Os10g35060
Os.2540.1.S1_at--144--1591Chr10:18373874..18373898 (25 bp)
AGCTCGCTCCATGGGTTGCCAAATA
LOC_Os10g35060
Os.2540.1.S1_at--1022--2831Chr10:18373814..18373838 (25 bp)
AAGTCCCTTGGGTTCGCGACAGATT
LOC_Os10g35060
Os.2540.1.S1_at--1075--6651Chr10:18373782..18373806 (25 bp)
GTTGAGCCGCTCAGGACAGTGTCAA
LOC_Os10g35060
Os.2540.1.S1_at--25--8051Chr10:18373728..18373752 (25 bp)
GGAGATTGACGTTTTACCTGTACAT
LOC_Os10g35060
Os.2540.1.S1_at--265--1751Chr10:18373713..18373737 (25 bp)
ACCTGTACATGTCTTTTGCCTTCTT
LOC_Os10g35060
Os.2540.1.S1_at--785--9551Chr10:18373692..18373716 (25 bp)
TCTTTTCTTGTTTCCACTCTTACTA
LOC_Os10g35060
Os.2540.1.S1_at--834--2691Chr10:18373644..18373668 (25 bp)
AAGCTCGCCCTCCTGTGATGTATGT
LOC_Os10g35060
Os.2540.1.S1_at--468--1231Chr10:18373601..18373625 (25 bp)
AGATTCTTTAAAGCCCTTGCTGCAA
LOC_Os10g35060
Target Sequence 
GGGCATACACATTTCTGTTGGGATTCTGTGGTTGATGAAATCAGGTATGTTCNAANCNCCTTTGGCNTACCCCCGAGAAA
GGAAGCGAAGGATGAACGGAGGAGACGGTTGGCTGCCCTTCTGCATATACCGCGATGGTTTCAATCCTGAAATATATCCA
GCTCTATGGTCTGACTACTACAACAAGAACAGAAGGGAACCAGAGAATACTCAGCTCGCTCCATGGGTTGCCAAATATTT
TTCCAAGTACTACTGACCCCCTACACCGATCCAAGTCCCTTGGGTTCGCGACAGATTGGATAGAGTTGAGCCGCTCAGGA
CAGTGTCAAAGCAGCTGCTGCATTTTCCTGGAAGAAAAGGAGATTGACGTTTTACCTGTACATGTCTTTTGCCTTCTTTT
CTTGTTTCCACTCTTACTATATGACTTTTGGGCAGGGCAACTAAGCTCGCCCTCCTGTGATGTATGTTGGAAAAATAATG
TGTAAAGATTCTTTAAAGCCCTTGCTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2540.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis