Browse Element(s) Details


Os.25401.1.S1_s_at

Description gb:CB662629
DB_XREF= gi:29666354
DB_XREF=OSJNEd06N10.f
CLONE=OSJNEd06N10
TID=Os.25401.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.25401 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_566359.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1917010/11G-patch domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19130OsAffx.17068.1.S1_at11/118+11435333..11435794hypothetical protein
LOC_Os08g19140Os.53001.1.S1_at11/118+11436299..11447193adenylate kinase family protein, putative, expressed
LOC_Os08g19150OsAffx.5874.1.S1_at11/118+11452315..11452824hypothetical protein
LOC_Os08g19160Os.54101.1.S1_x_at11/118+11454015..11456370Endomembrane protein 70 containing protein, expressed
LOC_Os08g19160Os.54241.1.S1_at11/118+11454015..11456370Endomembrane protein 70 containing protein, expressed
LOC_Os08g19170Os.7479.1.A1_at11/118+11456662..11462366G-patch domain containing protein, expressed
LOC_Os08g19170OsAffx.29271.1.S1_at11/118+11456662..11462366G-patch domain containing protein, expressed
LOC_Os08g19170Os.25401.1.S1_s_at10/118+11456662..11462366G-patch domain containing protein, expressed
LOC_Os08g19170Os.25401.2.S1_at9/118+11456662..11462366G-patch domain containing protein, expressed
LOC_Os08g19180OsAffx.31278.1.S1_at7/118+11463796..11466538Transposable element protein, putative, MuDR
LOC_Os08g19180OsAffx.31379.1.S1_at1/118+11463796..11466538Transposable element protein, putative, MuDR
LOC_Os08g19190OsAffx.29272.3.S1_x_at11/118+11467146..11468858hypothetical protein
LOC_Os08g19190OsAffx.29272.2.S1_x_at7/118+11467146..11468858hypothetical protein
LOC_Os08g19200OsAffx.5875.1.S1_at11/118+11470766..11471227hypothetical protein
LOC_Os08g19210Os.49742.2.S1_at11/118+11480945..11485029expressed protein
LOC_Os08g19210Os.49742.1.S1_at11/118+11480945..11485029expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25401.1.S1_s_at--388--4171Chr08:11459494..11459518 (25 bp)
CGCCTTGCATCTATTTATCACTTGA
LOC_Os08g19170
Os.25401.1.S1_s_at--1002--7091Chr08:11458363..11458387 (25 bp)
GTCACTGTGACATTAACCGCGGATT
LOC_Os08g19170
Os.25401.1.S1_s_at--127--10491Chr08:11458351..11458375 (25 bp)
TTAACCGCGGATTCTTCTTTACCAT
LOC_Os08g19170
Os.25401.1.S1_s_at--1121--5671NONE
GACTTGAAAAGCTCTTGGGAACTGA
NONE
Os.25401.1.S1_s_at--896--5851Chr08:11457718..11457742 (25 bp)
GAGCCTGAGGACTTTACTGTCAATT
LOC_Os08g19170
Os.25401.1.S1_s_at--1095--7611Chr08:11457693..11457717 (25 bp)
GGGAGAACTCTAAACGTCCAGCCCA
LOC_Os08g19170
Os.25401.1.S1_s_at--590--1071Chr08:11457663..11457687 (25 bp)
AGGGCCTCTCAGCTCCAGGAAAGTT
LOC_Os08g19170
Os.25401.1.S1_s_at--1007--1171Chr08:11457593..11457617 (25 bp)
AGTATCATTTGCTGAACGTCCTGTA
LOC_Os08g19170
Os.25401.1.S1_s_at--898--2571Chr08:11457579..11457603 (25 bp)
AACGTCCTGTATCTTTTGTCTCCTG
LOC_Os08g19170
Os.25401.1.S1_s_at--590--5111Chr08:11457552..11457576 (25 bp)
GCACTATGGCGGAATCTGTTACTGA
LOC_Os08g19170
Os.25401.1.S1_s_at--1101--5971Chr08:11457529..11457553 (25 bp)
GAGACAATTGCAGTTGCCACAACCA
LOC_Os08g19170
Target Sequence 
CGCCTTGCATCTATTTATCACTTGAAGNNTGGGTGTCAAGGTTCAGGAAAGAAAAGATTTGTCACTGTGACATTAACCGC
GGATTCTTCTTTACCATCTTCTGAGGGCCAAATNCGACTTGAAAAGCTCTTGGGAACTGAGCCTGAGGACTTTACTGTCA
ATTGGGAGAACTCTAAACGTCCAGCCCAAGTGAAGGGCCTCTCAGCTCCAGGAAAGTTGGCAAGGAATCAGACTTCCAGT
GGAAAGAAATCTTCCAAGAAACAAGTATCATTTGCTGAACGTCCTGTATCTTTTGTCTCCTGTNGCACTATGGCGGAATC
TGTTACTGAGACAATTGCAGTTGCCACAACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25401.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis