Browse Element(s) Details


Os.25401.2.S1_at

Description gb:CA762598
DB_XREF= gi:25806637
DB_XREF=BR060007A10E02.ab1
CLONE=BR060007A10E02.ab1
TID=Os.25401.2
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.25401 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_566359.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g191709/11G-patch domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19130OsAffx.17068.1.S1_at11/118+11435333..11435794hypothetical protein
LOC_Os08g19140Os.53001.1.S1_at11/118+11436299..11447193adenylate kinase family protein, putative, expressed
LOC_Os08g19150OsAffx.5874.1.S1_at11/118+11452315..11452824hypothetical protein
LOC_Os08g19160Os.54101.1.S1_x_at11/118+11454015..11456370Endomembrane protein 70 containing protein, expressed
LOC_Os08g19160Os.54241.1.S1_at11/118+11454015..11456370Endomembrane protein 70 containing protein, expressed
LOC_Os08g19170Os.7479.1.A1_at11/118+11456662..11462366G-patch domain containing protein, expressed
LOC_Os08g19170OsAffx.29271.1.S1_at11/118+11456662..11462366G-patch domain containing protein, expressed
LOC_Os08g19170Os.25401.1.S1_s_at10/118+11456662..11462366G-patch domain containing protein, expressed
LOC_Os08g19170Os.25401.2.S1_at9/118+11456662..11462366G-patch domain containing protein, expressed
LOC_Os08g19180OsAffx.31278.1.S1_at7/118+11463796..11466538Transposable element protein, putative, MuDR
LOC_Os08g19180OsAffx.31379.1.S1_at1/118+11463796..11466538Transposable element protein, putative, MuDR
LOC_Os08g19190OsAffx.29272.3.S1_x_at11/118+11467146..11468858hypothetical protein
LOC_Os08g19190OsAffx.29272.2.S1_x_at7/118+11467146..11468858hypothetical protein
LOC_Os08g19200OsAffx.5875.1.S1_at11/118+11470766..11471227hypothetical protein
LOC_Os08g19210Os.49742.2.S1_at11/118+11480945..11485029expressed protein
LOC_Os08g19210Os.49742.1.S1_at11/118+11480945..11485029expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25401.2.S1_at--1158--911NONE
AGGACAAGCTGGAGGGTTATGCCTT
NONE
Os.25401.2.S1_at--869--6071Chr08:11460296..11460348 (25 bp)
GAGTTTTATAGTTGCTTTCACATGA
LOC_Os08g19170
Os.25401.2.S1_at--409--6671Chr08:11460286..11460310 (25 bp)
GTTGCTTTCACATGAAGTGACCTTA
LOC_Os08g19170
Os.25401.2.S1_at--257--5831NONE
GACCTTATTTTGAAAGTTATGCCCG
NONE
Os.25401.2.S1_at--432--1211Chr08:11460254..11460278 (25 bp)
AGTTATGCCCGTATGATTCTAAATC
LOC_Os08g19170
Os.25401.2.S1_at--557--10571Chr08:11460238..11460262 (25 bp)
TTCTAAATCATCATAGCAGGAGTCT
LOC_Os08g19170
Os.25401.2.S1_at--380--1531Chr08:11460224..11460248 (25 bp)
AGCAGGAGTCTAGTTATTTTCTAAT
LOC_Os08g19170
Os.25401.2.S1_at--756--171Chr08:11460209..11460233 (25 bp)
ATTTTCTAATTCTCCAGCTCAATCC
LOC_Os08g19170
Os.25401.2.S1_at--382--10591Chr08:11460197..11460224 (25 bp)
TTCTCCAGCTCAATCCCCTAAAAAA
LOC_Os08g19170
Os.25401.2.S1_at--494--2311Chr08:11460175..11460199 (25 bp)
AAAGGCAAGCACACAGTCATTAATG
LOC_Os08g19170
Os.25401.2.S1_at--372--5131Chr08:11460167..11460191 (25 bp)
GCACACAGTCATTAATGTCTATGAT
LOC_Os08g19170
Target Sequence 
AGGACAAGCTGGAGGGTTATGCCTTGATGAATGCATCCGAGCAGTATGGGATGAAGAGGCCGAGCTCAGCAGATCGGTTG
AAGGGAAAGGGCACTGCTGTCAGGGCTTGTGACCGGGACCTGGCAAGTATGCGAGTGATGGGTCTGGATGATGTGATGAT
GGTAAAGGATGTACGCATGGCAAACAGATTAAGAAAGGGAGCAAAGGTGGCTTCATCATCTTCTCACCTCTCCAGGTCCT
GGCCTAATGAGGGTAGGAAGAGCAAGAAGTATCAGAGTGTACCAGGTGAGAAAAAGAAGCATCGGAAGGAACTCATTGCA
AAGAAGCGCCGCCAACGAATGCTAGGCAGAGGAGTTGATTTAGATCAAATTAATACTGTGAGTTTTATAGTTGCTTTCAC
ATGAAGTGACCTTATTTTGAAAGTTATGCCCGTATGATTCTAAATCATCATAGCAGGAGTCTAGTTATTTTCTAATTCTC
CAGCTCAATCCCCTAAAAAAAAAGGCAAGCACACAGTCATTAATGTCTATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25401.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis