Browse Element(s) Details


Os.25492.1.S1_at

Description gb:AK064926.1
DB_XREF= gi:32974944
TID=Os.25492.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.25492 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000N18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000N18, full insert sequence.
FL= gb:AK064926.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3516011/11eukaryotic translation initiation factor SUI1 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35140Os.21860.1.S1_at11/112+21092322..21098164Auxin response factor 1, putative, expressed
LOC_Os02g35144Os.23148.1.A1_at10/112+21098833..21102186Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g35150Os.49867.1.S1_at11/112+21104860..21109970Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os02g35160Os.23846.1.A1_s_at11/112+21110059..21116258eukaryotic translation initiation factor SUI1 family protein, putative, expressed
LOC_Os02g35160Os.25492.1.S1_at11/112+21110059..21116258eukaryotic translation initiation factor SUI1 family protein, putative, expressed
LOC_Os02g35170Os.11754.1.A1_at11/112+21116431..21119266oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g35180Os.23942.1.A1_at11/112+21122770..21125500response regulator 7, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0003723molecular_functionRNA binding
GO:0003743molecular_functiontranslation initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25492.1.S1_at--83--2751Chr02:21110723..21110747 (25 bp)
AAGAAGTTTGCTTGCAGCACCACCA
LOC_Os02g35160
Os.25492.1.S1_at--527--2171Chr02:21110568..21110592 (25 bp)
ACACGAGGTCTTGGTTCAAGGTGGA
LOC_Os02g35160
Os.25492.1.S1_at--101--7131Chr02:21110543..21110567 (25 bp)
GTCATCGATGACCTTGCAAAGCACC
LOC_Os02g35160
Os.25492.1.S1_at--648--5131Chr02:21110528..21110552 (25 bp)
GCAAAGCACCTTGTTGATCATTACG
LOC_Os02g35160
Os.25492.1.S1_at--603--9931Chr02:21110507..21110531 (25 bp)
TACGGTGTTCCGAAGAGGTTTATTG
LOC_Os02g35160
Os.25492.1.S1_at--996--10251Chr02:21110460..21110484 (25 bp)
TTAGAGGACAGGACAGAAGCAGGCA
LOC_Os02g35160
Os.25492.1.S1_at--1056--2711Chr02:21110444..21110468 (25 bp)
AAGCAGGCAGACTCTCAGTGCCGGA
LOC_Os02g35160
Os.25492.1.S1_at--312--3851Chr02:21110414..21110438 (25 bp)
CTGAAGTATCTTCAGGGACAGCGCA
LOC_Os02g35160
Os.25492.1.S1_at--929--5031Chr02:21110379..21110403 (25 bp)
GCAGACCAATGCTTAACGATATCAG
LOC_Os02g35160
Os.25492.1.S1_at--872--6591Chr02:21110354..21110378 (25 bp)
GATTGTATTCTGTGACTGCCATCAT
LOC_Os02g35160
Os.25492.1.S1_at--86--10571Chr02:21110303..21110327 (25 bp)
TTCTCACCACCTCTGGTTTTTATGC
LOC_Os02g35160
Target Sequence 
AAGAAGTTTGCTTGCAGCACCACCACAGCTGAGCTTCCAGGTAAGAAAGGGCAACACGAGGTCTTGGTTCAAGGTGGAGT
CATCGATGACCTTGCAAAGCACCTTGTTGATCATTACGGTGTTCCGAAGAGGTTTATTGAGGTTCTTGACAAAACAAAGC
GTTAGAGGACAGGACAGAAGCAGGCAGACTCTCAGTGCCGGAGGANCCTGAAGTATCTTCAGGGACAGCGCAGGAAGNGA
ATGCAGACCAATGCTTAACGATATCAGGATTGTATTCTGTGACTGCCATCATCAGAAGAAATTATGAGAAGATACCTCTT
CTCACCACCTCTGGTTTTTATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25492.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis