Browse Element(s) Details


Os.25496.1.S1_at

Description gb:AK071972.1
DB_XREF= gi:32981995
TID=Os.25496.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.25496 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013084L13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013084L13, full insert sequence.
FL= gb:AK071972.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0793011/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07900OsAffx.18735.1.S1_at10/1111+4067836..4070066hypothetical protein
LOC_Os11g07910Os.26444.1.S1_at11/1111+4072807..4079376Endomembrane protein 70 containing protein, expressed
LOC_Os11g07916Os.7859.1.S1_at11/1111+4087072..4089566nitrogen fixation protein, putative, expressed
LOC_Os11g07922Os.52255.1.S1_at11/1111+4090467..4093063oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g07922Os.52255.1.S1_x_at11/1111+4090467..4093063oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g07922OsAffx.18738.1.S1_x_at11/1111+4090467..4093063oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g07930Os.25496.1.S1_at11/1111+4093522..4097409oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g07940Os.22793.1.S1_at10/1111+4098869..4106094expressed protein
LOC_Os11g07950Os.49489.1.S1_at10/1111+4118397..4119430expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0009706cellular_componentchloroplast inner membrane
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25496.1.S1_at--697--5551Chr11:4096700..4096724 (25 bp)
GAAACCTTTTCTGAAGAGCATACCT
LOC_Os11g07930
Os.25496.1.S1_at--530--451Chr11:4096833..4096857 (25 bp)
ATCTAGCATTGCATCCTGGATTGAA
LOC_Os11g07930
Os.25496.1.S1_at--177--5711Chr11:4096883..4096907 (25 bp)
GACTGCAACGAAGCTACGCCGACGG
LOC_Os11g07930
Os.25496.1.S1_at--684--9951Chr11:4096897..4096921 (25 bp)
TACGCCGACGGCTGTTGCAAGAGAT
LOC_Os11g07930
Os.25496.1.S1_at--462--5311Chr11:4096995..4097019 (25 bp)
GAAGGTAGCGACCTGAACCTGAAGT
LOC_Os11g07930
Os.25496.1.S1_at--755--2951Chr11:4097112..4097136 (25 bp)
AATGGCATCGGTTTTAGGCTAGACT
LOC_Os11g07930
Os.25496.1.S1_at--341--7091Chr11:4097143..4097167 (25 bp)
GTCACTGAAAATTTTGCTTGTCCTA
LOC_Os11g07930
Os.25496.1.S1_at--947--7131Chr11:4097186..4097210 (25 bp)
GTCTTGTTCTAAACTTGTTCGGTTG
LOC_Os11g07930
Os.25496.1.S1_at--797--10411Chr11:4097200..4097224 (25 bp)
TTGTTCGGTTGTTCCTTTAGGCAAG
LOC_Os11g07930
Os.25496.1.S1_at--40--6131Chr11:4097260..4097284 (25 bp)
GAGTGTGACTATGTCATCCGATGAC
LOC_Os11g07930
Os.25496.1.S1_at--55--7571Chr11:4097305..4097329 (25 bp)
GGGCGAATCCACAGGGTATAACACT
LOC_Os11g07930
Target Sequence 
GAAACCTTTTCTGAAGAGCATACCTCAGNGNGNTGCGACGANCTGTTATCTAGCATTGCATCCTGGATTGAAGGACGTGT
CCGGCAAATACTTTGCCGACTGCAACGAAGCTACGCCGACGGCTGTTGCAAGAGATGCAGAGCTAGCAAAGAAGCTGTGG
GAGTTCAGTGAAGAACTTACCAGTGGNGATCAGAAGCTGAAGGAGAAGTGAAGGTAGCGACCTGAACCTGAAGTCGGCGG
CGACATTGGAAGGAGCGCAGTGCGCAGAGTTTGGTGGACTGGAGCTGGAGGGATGCGACGCAATGGAAGTACGAAACCAT
GAAAGCAATGGCATCGGTTTTAGGCTAGACTGAATATGTCACTGAAAATTTTGCTTGTCCTAAGTATACTATTAGTATAT
GTCTTGTTCTAAACTTGTTCGGTTGTTCCTTTAGGCAAGACTGAATATGTCTTGTTCTAAACTATTAGCTATGTGAGTGT
GACTATGTCATCCGATGACGATTGTACCCCNTACATTCAGGGGCGAATCCACAGGGTATAACACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25496.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis