Browse Element(s) Details


Os.25526.1.S1_at

Description gb:AK068527.1
DB_XREF= gi:32978545
TID=Os.25526.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25526 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013155H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013155H09, full insert sequence.
FL= gb:AK068527.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0160011/11expressed protein
LOC_Os01g441701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g01560Os.10703.2.S1_x_at1/119+394980..401077retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g01570Os.46785.2.S1_x_at5/119+401813..405775retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g01580NANA9+407391..407723hypothetical protein
LOC_Os09g01590Os.15296.1.S1_at11/119+409601..418217ab-hydrolase associated lipase region family protein, expressed
LOC_Os09g01590Os.9810.1.S1_at4/119+409601..418217ab-hydrolase associated lipase region family protein, expressed
LOC_Os09g01600Os.25526.1.S1_at11/119+421295..426050expressed protein
LOC_Os09g01600Os.40235.1.S1_at2/119+421295..426050expressed protein
LOC_Os09g01600Os.27457.1.S1_at2/119+421295..426050expressed protein
LOC_Os09g01610Os.51948.1.S1_at11/119+428888..431329expressed protein
LOC_Os09g01620Os.52200.1.S1_at11/119+436172..441919RNA pseudouridylate synthase family protein, expressed
LOC_Os09g01630Os.6813.1.S1_at11/119+443803..450698transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25526.1.S1_at--597--6532Chr09:425081..425105 (25 bp)
GATTTCGTGCTCACAGAGGGTTACA
LOC_Os09g01600
Os.25526.1.S1_at--157--6691Chr09:425145..425169 (25 bp)
GTTCGAGTAGCATGGTCAACCCTGT
LOC_Os09g01600
Os.25526.1.S1_at--741--791Chr09:425273..425297 (25 bp)
ATGGGCCTTTCCGAGATTTGTGATG
LOC_Os09g01600
Os.25526.1.S1_at--970--6291Chr09:425294..425318 (25 bp)
GATGATGCTGCAATTTTGGCCCACA
LOC_Os09g01600
Os.25526.1.S1_at--1079--151Chr09:425306..425330 (25 bp)
ATTTTGGCCCACAAGCTTCTAGGGA
LOC_Os09g01600
Os.25526.1.S1_at--216--1011Chr09:425364..425388 (25 bp)
AGGTCAATGGACTTGCCGGATACTC
LOC_Os09g01600
Os.25526.1.S1_at--523--4491Chr09:425378..425402 (25 bp)
GCCGGATACTCTCTTGATGGTTCTA
LOC_Os09g01600
Os.25526.1.S1_at--554--8871Chr09:425392..425416 (25 bp)
TGATGGTTCTACTTCGCATGGTCCT
LOC_Os09g01600
Os.25526.1.S1_at--54--5011Chr09:425407..425672 (25 bp)
GCATGGTCCTCAAGCTGCATGGACA
LOC_Os09g01600
Os.25526.1.S1_at--1053--6851Chr09:425870..425894 (25 bp)
GTTTGGTGCCAATCAGTTCACTCAA
LOC_Os09g01600
Os.25526.1.S1_at--238--8911Chr09:425896..425920 (25 bp)
TGAGACTCAATGGTGTTGCCTTTTG
LOC_Os09g01600
Target Sequence 
GATTTCGTGCTCACAGAGGGTTACAAAAATTTTGGTCATCAGCAGCATAAAATAGATGAAGCTTGTTCGAGTAGCATGGT
CAACCCTGTCAGTGTGAGTGGACATTTCTCGAGTGGAGCTGGTAGTAATATGAAGAAACCTACTTTGCATGAGGTTGTTG
GTGCCAATGAAGTGGAAATAAGAAGAAGCTCCATGGGCCTTTCCGAGATTTGTGATGATGCTGCAATTTTGGCCCACAAG
CTTCTAGGGAAAATTCTGGACAACACGTTGCTTGCAGAAAACAAGGTCAATGGACTTGCCGGATACTCTCTTGATGGTTC
TACTTCGCATGGTCCTCAAGCTGCATGGACAAAGTGAGGAGGATGTTGCATGATGATAAACAATGAGTATGGTCTGCAAA
AATAATGCTTGTTTGGTGCCAATCAGTTCACTCAAATGAGACTCAATGGTGTTGCCTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25526.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis