Browse Element(s) Details


Os.25532.1.S1_a_at

Description gb:AK111860.1
DB_XREF= gi:37988523
TID=Os.25532.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.25532 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-127-D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033025A12, full insert sequence.
FL= gb:AK111860.1 gb:AK112085.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5155010/11Will die slowly protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51510OsAffx.3576.1.S1_s_at11/113+29413483..29416252Mitochondrial 60S ribosomal protein L6, putative, expressed
LOC_Os03g51510Os.7389.1.S1_at11/113+29413483..29416252Mitochondrial 60S ribosomal protein L6, putative, expressed
LOC_Os03g51520Os.25317.1.S1_at11/113+29418244..29428601Fip1 motif family protein, expressed
LOC_Os03g51530Os.54698.1.S1_at11/113+29429795..29430440expressed protein
LOC_Os03g51540Os.33892.2.S1_x_at10/113+29430880..29435426Lariat debranching enzyme, C-terminal domain containing protein, expressed
LOC_Os03g51540Os.33892.1.S1_at8/113+29430880..29435426Lariat debranching enzyme, C-terminal domain containing protein, expressed
LOC_Os03g51550Os.25532.1.S1_a_at10/113+29436578..29441090Will die slowly protein, putative, expressed
LOC_Os03g51556OsAffx.13459.1.S1_at10/113+29442658..29445497hypothetical protein
LOC_Os03g51562NANA3+29449881..29450079NA
LOC_Os03g51570OsAffx.3577.1.S1_at11/113+29462895..29465992hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007186biological_processG-protein coupled receptor protein signaling pathway
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25532.1.S1_a_at--443--9591NONE
TCTTGATAGCAAGCTGAGGCTCTGG
NONE
Os.25532.1.S1_a_at--398--6211Chr03:29439794..29439818 (25 bp)
GAGGCTCTGGAATTTCTCAGCTGGG
LOC_Os03g51550
Os.25532.1.S1_a_at--718--3571Chr03:29439832..29439856 (25 bp)
CATATACTGGCCATGTGAACACAAA
LOC_Os03g51550
Os.25532.1.S1_a_at--603--5051Chr03:29439870..29439894 (25 bp)
GCAGCATTTTCAATCACCAATGGCA
LOC_Os03g51550
Os.25532.1.S1_a_at--600--2831Chr03:29439894..29439918 (25 bp)
AAGTATATTGTCAGTGGCTCGGAGG
LOC_Os03g51550
Os.25532.1.S1_a_at--285--7451Chr03:29439925..29439949 (25 bp)
GTGTCTACATATGGGATCTTCAGTC
LOC_Os03g51550
Os.25532.1.S1_a_at--1156--8191Chr03:29439971..29439995 (25 bp)
GGAAGGTCATACTGACACAGTCATT
LOC_Os03g51550
Os.25532.1.S1_a_at--142--2131Chr03:29439987..29440011 (25 bp)
ACAGTCATTGCAGTGTCATGCCACC
LOC_Os03g51550
Os.25532.1.S1_a_at--539--1111Chr03:29439998..29440022 (25 bp)
AGTGTCATGCCACCCCAATGAAAAC
LOC_Os03g51550
Os.25532.1.S1_a_at--95--2411Chr03:29440019..29440043 (25 bp)
AAACATGATTGCATCGGGAGGACTT
LOC_Os03g51550
Os.25532.1.S1_a_at--822--5311Chr03:29440039..29440063 (25 bp)
GACTTGACGGCGATAAGACGGTGAA
LOC_Os03g51550
Target Sequence 
TCTTGATAGCAAGCTGAGGCTCTGGAATTTCTCAGCTGGGAAATTTCTTAAGACATATACTGGCCATGTGAACACAAAAT
ACTGCATTCCAGCAGCATTTTCAATCACCAATGGCAAGTATATTGTCAGTGGCTCGGAGGACAAGTGTGTCTACATATGG
GATCTTCAGTCAAGAAAGATTTTGCAGAAATTGGAAGGTCATACTGACACAGTCATTGCAGTGTCATGCCACCCCAATGA
AAACATGATTGCATCGGGAGGACTTGACGGCGATAAGACGGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25532.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis