Browse Element(s) Details


Os.25547.1.S1_at

Description gb:CB096677
DB_XREF= gi:27920869
DB_XREF=AF53-Rpf_06_P18_T7_079.ab1
CLONE=C0002298
TID=Os.25547.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.25547 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_177473.1 (A.thaliana) putative serine carboxypeptidase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g242009/11Serine carboxypeptidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24180OsAffx.31104.1.S1_at11/1111+13270501..13275749sinapoylglucose:choline sinapoyltransferase, putative
LOC_Os11g24190OsAffx.18983.1.S1_at11/1111+13280060..13280506hypothetical protein
LOC_Os11g24200OsAffx.31105.1.S1_at11/1111+13283115..13285119Serine carboxypeptidase family protein, expressed
LOC_Os11g24200Os.25547.1.S1_at9/1111+13283115..13285119Serine carboxypeptidase family protein, expressed
LOC_Os11g24210OsAffx.7184.1.S1_at11/1111+13286298..13287057hypothetical protein
LOC_Os11g24220Os.40360.1.S1_x_at5/1111+13289499..13291952hypothetical protein
LOC_Os11g24220Os.40855.5.S1_x_at1/1111+13289499..13291952hypothetical protein
LOC_Os11g24230OsAffx.31106.1.S1_at10/1111+13295484..13298421hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004185molecular_functionserine carboxypeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25547.1.S1_at--597--4111Chr11:13283334..13283358 (25 bp)
CCTAACCGATTTTGCAATACCCTAT
LOC_Os11g24200
Os.25547.1.S1_at--773--5191Chr11:13283321..13283345 (25 bp)
GCAATACCCTATGTCGACTTGTTTC
LOC_Os11g24200
Os.25547.1.S1_at--483--771Chr11:13283311..13283335 (25 bp)
ATGTCGACTTGTTTCGCCAGTGGTT
LOC_Os11g24200
Os.25547.1.S1_at--1025--9311Chr11:13283298..13283322 (25 bp)
TCGCCAGTGGTTCAAGTCATCTTTT
LOC_Os11g24200
Os.25547.1.S1_at--152--10511Chr11:13283274..13283298 (25 bp)
TTAATTACTGTTGGATTGCTCTAAG
LOC_Os11g24200
Os.25547.1.S1_at--138--71Chr11:13283260..13283284 (25 bp)
ATTGCTCTAAGATTCATGCTGTCAG
LOC_Os11g24200
Os.25547.1.S1_at--1158--611Chr11:13283245..13283269 (25 bp)
ATGCTGTCAGTTTCTCACTGAGGAC
LOC_Os11g24200
Os.25547.1.S1_at--166--3851NONE
CTGAGGACTACTACCGTGTTGTTTC
NONE
Os.25547.1.S1_at--315--9971NONE
TACCGTGTTGTTTCGCTAATATATG
NONE
Os.25547.1.S1_at--523--2391Chr11:13283157..13283181 (25 bp)
AAACTTACTCTGTTATTGCAGCCAC
LOC_Os11g24200
Os.25547.1.S1_at--627--9471Chr11:13283149..13283173 (25 bp)
TCTGTTATTGCAGCCACACAAAGTG
LOC_Os11g24200
Target Sequence 
CCTAACCGATTTTGCAATACCCTATGTCGACTTGTTTCGCCAGTGGTTCAAGTCATCTTTTTAATTACTGTTGGATTGCT
CTAAGATTCATGCTGTCAGTTTCTCACTGAGGACTACTACCGTGTTGTTTCGCTAATATATGATGTTAGTTTCTAAATGT
TTGTTGACCATTCATTTTAAACTTACTCTGTTATTGCAGCCACACAAAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25547.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis