Browse Element(s) Details


OsAffx.31106.1.S1_at

Description tigr:9639.m02137
TID=OsAffx.31106.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2423010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24180OsAffx.31104.1.S1_at11/1111+13270501..13275749sinapoylglucose:choline sinapoyltransferase, putative
LOC_Os11g24190OsAffx.18983.1.S1_at11/1111+13280060..13280506hypothetical protein
LOC_Os11g24200OsAffx.31105.1.S1_at11/1111+13283115..13285119Serine carboxypeptidase family protein, expressed
LOC_Os11g24200Os.25547.1.S1_at9/1111+13283115..13285119Serine carboxypeptidase family protein, expressed
LOC_Os11g24210OsAffx.7184.1.S1_at11/1111+13286298..13287057hypothetical protein
LOC_Os11g24220Os.40360.1.S1_x_at5/1111+13289499..13291952hypothetical protein
LOC_Os11g24220Os.40855.5.S1_x_at1/1111+13289499..13291952hypothetical protein
LOC_Os11g24230OsAffx.31106.1.S1_at10/1111+13295484..13298421hypothetical protein
LOC_Os11g24240OsAffx.18985.1.S1_at11/1111+13310424..13312114sinapoylglucose:choline sinapoyltransferase, putative
LOC_Os11g24250NANA11+13313575..13315542Zinc knuckle family protein
LOC_Os11g24260OsAffx.31107.1.S1_at11/1111+13321040..13321606hypothetical protein
LOC_Os11g24270NANA11+13321993..13326513retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31106.1.S1_at--43--1331Chr11:13297163..13297187 (25 bp)
AGAGGAGCTCGTGCTAGGCATAGAC
LOC_Os11g24230
OsAffx.31106.1.S1_at--214--7331Chr11:13297173..13297197 (25 bp)
GTGCTAGGCATAGACGTGGATCCGT
LOC_Os11g24230
OsAffx.31106.1.S1_at--831--1911Chr11:13297186..13297210 (25 bp)
ACGTGGATCCGTGCTGACAGGGCAA
LOC_Os11g24230
OsAffx.31106.1.S1_at--1105--531Chr11:13297192..13297216 (25 bp)
ATCCGTGCTGACAGGGCAAGGTTGC
LOC_Os11g24230
OsAffx.31106.1.S1_at--210--2911NONE
AAGGTTGCGAGACATTTCTTGGATC
NONE
OsAffx.31106.1.S1_at--94--5991Chr11:13298169..13298188 (20 bp)
GAGACATTTCTTGGATCGAAGGAAT
LOC_Os11g24230
OsAffx.31106.1.S1_at--283--4111Chr11:13298180..13298204 (25 bp)
CGAAGGAATGGTTTGAGTGCGACAC
LOC_Os11g24230
OsAffx.31106.1.S1_at--1010--6231Chr11:13298237..13298261 (25 bp)
GATGGCAGCGCATCGGCGAAGCAAA
LOC_Os11g24230
OsAffx.31106.1.S1_at--439--1631Chr11:13298278..13298302 (25 bp)
AGCGAGGAGGGCGACATTGAACCAT
LOC_Os11g24230
OsAffx.31106.1.S1_at--899--4091Chr11:13298289..13298313 (25 bp)
CGACATTGAACCATCGGTGGAGATC
LOC_Os11g24230
OsAffx.31106.1.S1_at--261--5431Chr11:13298296..13298320 (25 bp)
GAACCATCGGTGGAGATCGGTAGTT
LOC_Os11g24230
Target Sequence 
AGAGGAGCTCGTGCTAGGCATAGACGTGGATCCGTGCTGACAGGGCAAGGTTGCGAGACATTTCTTGGATCGAAGGAATG
GTTTGAGTGCGACACGGTGTGGCAGCAGAGAAGCTTGAGGCTCCGGGGATGGCAGCGCATCGGCGAAGCAAATCGGCAGG
GCGAGACCAGCGAGGAGGGCGACATTGAACCATCGGTGGAGATCGGTAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31106.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis